Prakash M. Nadkarni

Publication Activity (10 Years)

Years Active: 1991-2014
Publications (10 Years): 0

Top Topics

Software Requirements

Natural Language

Statistical Analysis

Biological Entities

Top Venues

J. Am. Medical Informatics Assoc.

BMC Medical Informatics Decis. Mak.

J. Clin. Bioinform.

Publications

Lemuel R. Waitman, Lauren S. Aaronson, Prakash M. Nadkarni, Daniel W. Connolly, James R. Campbell
Brief communication: The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. J. Am. Medical Informatics Assoc. 21 (4) (2014)
Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson
Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. J. Am. Medical Informatics Assoc. 20 (5) (2013)
Hemant Shah, Raymond D. Allard, Robert Enberg, Ganesh Krishnan, Patricia Williams, Prakash M. Nadkarni
Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts. BMC Medical Informatics Decis. Mak. 12 (2012)
Prakash M. Nadkarni, Chirag Parikh
An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature. J. Clin. Bioinform. 2 (2012)
Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner
Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. 18 (5) (2011)
Rachel L. Richesson, Prakash M. Nadkarni
Data standards for clinical research data collection forms: current status and challenges. J. Am. Medical Informatics Assoc. 18 (3) (2011)
Richard Morse, Prakash M. Nadkarni, David A. Schoenfeld, Dianne M. Finkelstein
Web-browser encryption of personal health information. BMC Medical Informatics Decis. Mak. 11 (2011)
Hemant Shah, Ganesh Krishnan, Patricia Williams, Arthur Vogler, Raymond D. Allard, Prakash M. Nadkarni
Interoperability and Integration Considerations for a Process-Oriented Clinical Decision Support System. SERVICES (2011)
Prakash M. Nadkarni, Rowena Kemp, Chirag Parikh
Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach. J. Clin. Bioinform. 1 (2011)
Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman
Natural language processing: an introduction. J. Am. Medical Informatics Assoc. 18 (5) (2011)
Prakash M. Nadkarni, Luis N. Marenco
Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach. J. Am. Medical Informatics Assoc. 17 (2) (2010)
Prakash M. Nadkarni, Jonathan D. Darer
Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study. BMC Medical Informatics Decis. Mak. 10 (2010)
Prakash M. Nadkarni
Drug safety surveillance using de-identified EMR and claims data: issues and challenges. J. Am. Medical Informatics Assoc. 17 (6) (2010)
Prakash M. Nadkarni, Jonathan A. Darer
Migrating existing clinical content from ICD-9 to SNOMED. J. Am. Medical Informatics Assoc. 17 (5) (2010)
Luis N. Marenco, Rixin Wang, Prakash M. Nadkarni
Model Formulation: Automated Database Mediation Using Ontological Metadata Mappings. J. Am. Medical Informatics Assoc. 16 (5) (2009)
Prakash M. Nadkarni, Randolph A. Miller
Service-oriented Architecture in Medical Software: Promises and Perils. J. Am. Medical Informatics Assoc. 14 (2) (2007)
Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd
SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. 8 (3) (2007)
Valentin Dinu, Prakash M. Nadkarni
Guidelines for the effective use of entity-attribute-value modeling for biomedical databases. Int. J. Medical Informatics 76 (11-12) (2007)
Valentin Dinu, Prakash M. Nadkarni, Cynthia Brandt
Pivoting approaches for bulk extraction of Entity-Attribute-Value data. Comput. Methods Programs Biomed. 82 (1) (2006)
Aniruddha M. Deshpande, Richard N. Shiffman, Prakash M. Nadkarni
Metadata-driven Delphi rating on the Internet. Comput. Methods Programs Biomed. 77 (1) (2005)
Cynthia Brandt, Charles Lu, Prakash M. Nadkarni
Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies. AMIA (2005)
Kexin Sun, Prakash M. Nadkarni, Cynthia Brandt
Metadata Driven Generation of Reports for Clinical Studies. AMIA (2005)
Stephanie Argraves, Cynthia Brandt, Roy Money, Prakash M. Nadkarni
Informatics Tools to Improve Clinical Research. AMIA (2005)
Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao
VitaPad: visualization tools for the analysis of pathway data. Bioinform. 21 (8) (2005)
Cynthia Brandt, Rohit Gadagkar, Cesar Rodriguez, Prakash M. Nadkarni
Application of Information Technology: Managing Complex Change in Clinical Study Metadata. J. Am. Medical Informatics Assoc. 11 (5) (2004)
Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
Model Formulation: QIS: A Framework for Biomedical Database Federation. J. Am. Medical Informatics Assoc. 11 (6) (2004)
Prakash M. Nadkarni
Evolving standards for clinical content in biomedicine: overview and lessons. Int. J. Serv. Stand. 1 (1) (2004)
Cynthia Brandt, Aniruddha M. Deshpande, Charles Lu, Gowri Ananth, Kexin Sun, Rohit Gadagkar, Richard Morse, Cesar Rodriguez, Perry L. Miller, Prakash M. Nadkarni
TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo. AMIA (2003)
Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni
Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. J. Am. Medical Informatics Assoc. 10 (5) (2003)
Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd
Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA (2003)
Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1 (3) (2003)
Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. Int. J. Medical Informatics 70 (1) (2003)
John M. Fisk, Pradeep Mutalik, Forrest W. Levin, Joseph Erdos, Caroline Taylor, Prakash M. Nadkarni
Model Formulation: Integrating Query of Relational and Textual Data in Clinical Databases: A Case Study. J. Am. Medical Informatics Assoc. 10 (1) (2003)
Cynthia Brandt, Richard Morse, Keri Matthews, Kexin Sun, Aniruddha M. Deshpande, Rohit Gadagkar, Dorothy B. Cohen, Perry L. Miller, Prakash M. Nadkarni
Metadata-driven creation of data marts from an EAV-modeled clinical research database. Int. J. Medical Informatics 65 (3) (2002)
Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni
Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies. J. Am. Medical Informatics Assoc. 9 (4) (2002)
Prakash M. Nadkarni, Luis N. Marenco
Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA (2001)
Pradeep Mutalik, Aniruddha M. Deshpande, Prakash M. Nadkarni
Research Paper: Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS. J. Am. Medical Informatics Assoc. 8 (6) (2001)
Cynthia Brandt, Prakash M. Nadkarni
Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods. Comput. Methods Programs Biomed. 64 (1) (2001)
Aniruddha M. Deshpande, Prakash M. Nadkarni
Metadata-driven Ad Hoc Query of Clinical Studies Data. AMIA (2001)
Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd
Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. 8 (1) (2001)
Prakash M. Nadkarni, Roland Chen, Cynthia Brandt
Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study. J. Am. Medical Informatics Assoc. 8 (1) (2001)
Sanjay K. Fernando, Cynthia Brandt, Prakash M. Nadkarni
Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database. AMIA (2001)
Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases. AMIA (2001)
Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Res. 28 (1) (2000)
Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
The SenseLab Database: System Design Towards Interoperability. AMIA (2000)
H. David Stein, Prakash M. Nadkarni, Joseph Erdos, Perry L. Miller
Research Paper: Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository. J. Am. Medical Informatics Assoc. 7 (1) (2000)
Prakash M. Nadkarni, Cynthia Brandt, Luis N. Marenco
Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases. J. Am. Medical Informatics Assoc. 7 (4) (2000)
Peter L. Perrotta, Prakash M. Nadkarni
Integration of a hematopoietic progenitor cell program using the ACT/DB database system. Comput. Methods Programs Biomed. 61 (3) (2000)
Roland Chen, Prakash M. Nadkarni, Luis N. Marenco, Forrest W. Levin, Joseph Erdos, Perry L. Miller
Research Paper: Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. J. Am. Medical Informatics Assoc. 7 (5) (2000)
Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
Neuronal database integration: the Senselab EAV data model. AMIA (1999)
Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Res. 27 (1) (1999)
Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller
Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. J. Am. Medical Informatics Assoc. 6 (6) (1999)
Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14 (6) (1998)
Cynthia Brandt, Prakash M. Nadkarni, Lee Schacter, Daniel Zelterman, Yuli Li, John M. Fisk, Edward K. Shultz, Perry L. Miller
ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers. AMIA (1998)
Prakash M. Nadkarni
Mapmerge: merge genomic maps. Bioinform. 14 (4) (1998)
Prakash M. Nadkarni
Application of Information Technology: Data Extraction and Ad Hoc Query of an Entity - Attribute - Value Database. J. Am. Medical Informatics Assoc. 5 (6) (1998)
Prakash M. Nadkarni, Cynthia Brandt, Sandra J. Frawley, Frederick G. Sayward, Robin Einbinder, Daniel Zelterman, Lee Schacter, Perry L. Miller
Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System. J. Am. Medical Informatics Assoc. 5 (2) (1998)
Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
Automatic query mapping among genomic databases: a pilot exploration. AMIA (1998)
Prakash M. Nadkarni
Mapdiff: determining differences between two genomic maps. Comput. Appl. Biosci. 13 (3) (1997)
Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd
Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. J. Am. Medical Informatics Assoc. 3 (6) (1996)
Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd
DNA Workbench: A Database Package to Manage Regional Physical Mapping. J. Comput. Biol. 3 (2) (1996)
Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati
Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. J. Am. Medical Informatics Assoc. 2 (6) (1995)
Prakash M. Nadkarni, Stephen T. Reeders, Jing Zhou
A modification of the ALIGN program to assist visual interpretation of mutated sequences. Comput. Appl. Biosci. 10 (3) (1994)
Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz
Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. Comput. Appl. Biosci. 8 (2) (1992)
Perry L. Miller, Prakash M. Nadkarni, William R. Pearson
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Comput. Appl. Biosci. 8 (2) (1992)
Dean F. Sittig, Mark A. Shifman, Prakash M. Nadkarni, Perry L. Miller
Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. Int. J. High Perform. Comput. Appl. 6 (2) (1992)
Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero
Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Comput. Appl. Biosci. 7 (1) (1991)