Özlem Uzuner

ORCID

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 99

Top Venues

CoRR

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

AMIA

Publications

Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. LREC/COLING (2024)
Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. LREC/COLING (2024)
Sungsoo Ray Hong, Marcos Zampieri, Brittany N. Hand, Vivian Motti, Dongjun Chung, Özlem Uzuner
Collaborative Design for Job-Seekers with Autism: A Conceptual Framework for Future Research. CoRR (2024)
Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. CoRR (2024)
Yanjun Gao, Diwakar Mahajan, Özlem Uzuner, Meliha Yetisgen
Clinical natural language processing for secondary uses. J. Biomed. Informatics 150 (2024)
Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. CoRR (2024)
Sadiya Sayara Chowdhury Puspo, Md. Nishat Raihan, Dhiman Goswami, Al Nahian Bin Emran, Amrita Ganguly, Özlem Uzuner
MasonTigers at SemEval-2024 Task 8: Performance Analysis of Transformer-based Models on Machine-Generated Text Detection. CoRR (2024)
Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Özlem Uzuner
Overview of the 2022 n2c2 shared task on contextualized medication event extraction in clinical notes. J. Biomed. Informatics 144 (2023)
Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task. J. Biomed. Informatics 142 (2023)
Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
The 2022 n2c2/UW shared task on extracting social determinants of health. J. Am. Medical Informatics Assoc. 30 (8) (2023)
Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
LeafAI: query generator for clinical cohort discovery rivaling a human programmer. CoRR (2023)
Giridhar Kaushik Ramachandran, Haritha Gangavarapu, Kevin Lybarger, Özlem Uzuner
MasonNLP+ at SemEval-2023 Task 8: Extracting Medical Questions, Experiences and Claims from Social Media using Knowledge-Augmented Pre-trained Language Models. CoRR (2023)
Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
The 2022 n2c2/UW Shared Task on Extracting Social Determinants of Health. CoRR (2023)
Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
Extracting medication changes in clinical narratives using pre-trained language models. J. Biomed. Informatics 139 (2023)
Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
LeafAI: query generator for clinical cohort discovery rivaling a human programmer. J. Am. Medical Informatics Assoc. 30 (12) (2023)
Fardin Ahsan Sakib, Ahnaf Atef Choudhury, Özlem Uzuner
MASON-NLP at eRisk 2023: Deep Learning-Based Detection of Depression Symptoms from Social Media Texts. CLEF (Working Notes) (2023)
Kevin Lybarger, Oliver J. Bear Don't Walk, Meliha Yetisgen, Özlem Uzuner
Advancements in extracting social determinants of health information from narrative text. J. Am. Medical Informatics Assoc. 30 (8) (2023)
Giridhar Kaushik Ramachandran, Haritha Gangavarapu, Kevin Lybarger, Özlem Uzuner
MasonNLP+ at SemEval-2023 Task 8: Extracting Medical Questions, Experiences and Claims from Social Media using Knowledge-Augmented Pre-trained Language Models. SemEval@ACL (2023)
Fardin Ahsan Sakib, Ahnaf Atef Choudhury, Özlem Uzuner
MASON-NLP at eRisk 2023: Deep Learning-Based Detection of Depression Symptoms from Social Media Texts. CoRR (2023)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task. CoRR (2023)
Kevin Lybarger, Nicholas J. Dobbins, Ritche Long, Angad Singh, Patrick Wedgeworth, Özlem Uzuner, Meliha Yetisgen
Leveraging natural language processing to augment structured social determinants of health data in the electronic health record. J. Am. Medical Informatics Assoc. 30 (8) (2023)
Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. ClinicalNLP@ACL (2023)
Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. CoRR (2023)
Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy A. Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
A scoping review of publicly available language tasks in clinical natural language processing. J. Am. Medical Informatics Assoc. 29 (10) (2022)
Fatemah Husain, Özlem Uzuner
Investigating the Effect of Preprocessing Arabic Text on Offensive Language and Hate Speech Detection. ACM Trans. Asian Low Resour. Lang. Inf. Process. 21 (4) (2022)
Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
Extracting Medication Changes in Clinical Narratives using Pre-trained Language Models. CoRR (2022)
Meliha Yetisgen, Özlem Uzuner, Yanjun Gao, Diwakar Mahajan
Call for papers: Special issue on clinical natural language processing for secondary use applications. J. Biomed. Informatics 133 (2022)
Kahyun Lee, Mehmet Kayaalp, Sam Henry, Özlem Uzuner
A Context-Enhanced De-identification System. ACM Trans. Comput. Heal. 3 (1) (2022)
Fatemah Husain, Özlem Uzuner
Transfer Learning Across Arabic Dialects for Offensive Language Detection. IALP (2022)
Fatemah Husain, Özlem Uzuner
Fine-Tuning Approach for Arabic Offensive Language Detection System: BERT-Based Model. CoRR (2022)
Nicholas J. Dobbins, Tony Mullen, Özlem Uzuner, Meliha Yetisgen
The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria. CoRR (2022)
Maryam Heidari, James H. Jones Jr., Özlem Uzuner
Online User Profiling to Detect Social Bots on Twitter. CoRR (2022)
Graciela Gonzalez-Hernandez, Martin Krallinger, Monica Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation 2022 (2022) (2022)
Kevin Lybarger, Namu Park, Sitong Zhou, Aashka Damani, Alison Brennan, Jagjeet Gill, Nianiella Dorvall, Vy Huynh, Spencer Lewis, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
A Corpus of Radiology Reports From Multiple Imaging Modalities With Fine-grained Event-based Annotations. AMIA (2022)
Zahra Rajabi, Özlem Uzuner, Amarda Shehu
Detecting Scarce Emotions Using BERT and Hyperparameter Optimization. ICANN (5) (2021)
Prakruthi Karuna, Hemant Purohit, Sushil Jajodia, Rajesh Ganesan, Özlem Uzuner
Fake Document Generation for Cyber Deception by Manipulating Text Comprehensibility. IEEE Syst. J. 15 (1) (2021)
Andriy Mulyar, Özlem Uzuner, Bridget T. McInnes
MT-clinical BERT: scaling clinical information extraction with multitask learning. J. Am. Medical Informatics Assoc. 28 (10) (2021)
Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. 28 (11) (2021)
Fatemah Husain, Özlem Uzuner
Leveraging Offensive Language for Sarcasm and Sentiment Detection in Arabic. WANLP (2021)
Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
Transferability of neural network clinical deidentification systems. J. Am. Medical Informatics Assoc. 28 (12) (2021)
Nicholas J. Dobbins, David Wayne, Kahyun Lee, Özlem Uzuner, Meliha Yetisgen
Performance of Automatic De-identification Across Different Note Types. CoRR (2021)
Samira Zad, Maryam Heidari, James H. Jones Jr., Özlem Uzuner
Emotion Detection of Textual Data: An Interdisciplinary Survey. AIIoT (2021)
Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
Transferability of Neural Network-based De-identification Systems. CoRR (2021)
Maryam Heidari, Samira Zad, Parisa Hajibabaee, Masoud Malekzadeh, SeyyedPooya HekmatiAthar, Özlem Uzuner, James H. Jones
BERT Model for Fake News Detection Based on Social Bot Activities in the COVID-19 Pandemic. UEMCON (2021)
Fatemah Husain, Özlem Uzuner
Transfer Learning Approach for Arabic Offensive Language Detection System - BERT-Based Model. CoRR (2021)
Samira Zad, Maryam Heidari, James H. Jones, Özlem Uzuner
A Survey on Concept-Level Sentiment Analysis Techniques of Textual Data. AIIoT (2021)
Wilson Lau, David Wayne, Spencer Lewis, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
A New Corpus for Clinical Findings in Radiology Reports. AMIA (2021)
Yasas Senarath, Jennifer L. Chan, Hemant Purohit, Özlem Uzuner
Evaluating the Relevance of UMLS Knowledge Base for Public Health Informatics during Disasters. ISCRAM (2021)
Jooyeon Lee, Huong Dang, Özlem Uzuner, Sam Henry
MNLP at MEDIQA 2021: Fine-Tuning PEGASUS for Consumer Health Question Summarization. BioNLP@NAACL-HLT (2021)
Egoitz Laparra, Xin Su, Yiyun Zhao, Özlem Uzuner, Timothy Miller, Steven Bethard
SemEval-2021 Task 10: Source-Free Domain Adaptation for Semantic Processing. SemEval@ACL/IJCNLP (2021)
Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
A Scoping Review of Publicly Available Language Tasks in Clinical Natural Language Processing. CoRR (2021)
Kahyun Lee, Mehmet Kayaalp, Sam Henry, Özlem Uzuner
A Context-Enhanced De-identification System. CoRR (2021)
Jinsung Jeon, Jing Liu, Jayoung Kim, Jaehoon Lee, Noseong Park, Jamie Jooyeon Lee, Özlem Uzuner, Sushil Jajodia
Scalable Graph Synthesis with Adj and 1 - Adj. SDM (2021)
Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. CoRR (2021)
Fatemah Husain, Özlem Uzuner
Exploratory Arabic Offensive Language Dataset Analysis. CoRR (2021)
Masoud Malekzadeh, Parisa Hajibabaee, Maryam Heidari, Samira Zad, Özlem Uzuner, James H. Jones
Review of Graph Neural Network in Text Classification. UEMCON (2021)
Kevin Lybarger, Aashka Damani, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model. CoRR (2021)
Fatemah Husain, Özlem Uzuner
A Survey of Offensive Language Detection for the Arabic Language. ACM Trans. Asian Low Resour. Lang. Inf. Process. 20 (1) (2021)
Zahra Rajabi, Amarda Shehu, Özlem Uzuner
A Multi-channel BiLSTM-CNN Model for Multilabel Emotion Classification of Informal Text. ICSC (2020)
Irena Spasic, Özlem Uzuner, Li Zhou
Emerging clinical applications of text analytics. Int. J. Medical Informatics 134 (2020)
Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. AMIA (2020)
Özlem Uzuner, Amber Stubbs, Leslie Lenert
Advancing the state of the art in automatic extraction of adverse drug events from narratives. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Fatemah Husain, Jooyeon Lee, Samuel Henry, Özlem Uzuner
SalamNET at SemEval-2020 Task12: Deep Learning Approach for Arabic Offensive Language Detection. CoRR (2020)
Corey Sutphin, Kahyun Lee, Antonio Jimeno-Yepes, Özlem Uzuner, Bridget T. McInnes
Adverse drug event detection using reason assignments in FDA drug labels. J. Biomed. Informatics 110 (2020)
Maryam Heidari, James H. Jones, Özlem Uzuner
Deep Contextualized Word Embedding for Text-based Online User Profiling to Detect Social Bots on Twitter. ICDM (Workshops) (2020)
Sam Henry, Kevin Buchan, Michele Filannino, Amber Stubbs, Özlem Uzuner
2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Fatemah Husain, Jooyeon Lee, Sam Henry, Özlem Uzuner
SalamNET at SemEval-2020 Task 12: Deep Learning Approach for Arabic Offensive Language Detection. SemEval@COLING (2020)
Huong Dang, Kahyun Lee, Sam Henry, Özlem Uzuner
Ensemble BERT for Classifying Medication-mentioning Tweets. SMM4H@COLING (2020)
Kahyun Lee, Sam Henry, Özlem Uzuner
Medical Concept Normalization via Description Prediction. AMIA (2020)
Kevin Lybarger, Elizabeth Chang, Kylie Kerker, Jolie Shen, Erica Qiao, Özlem Uzuner, Mari Ostendorf, Meliha Yetisgen
A Novel Corpus With Detailed Annotations of Social Determinants of Health. AMIA (2020)
Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Yanshan Wang, Hua Xu, Özlem Uzuner
Editorial: The second international workshop on health natural language processing (HealthNLP 2019). BMC Medical Informatics Decis. Mak. (5) (2019)
Wilson Lau, Thomas H. Payne, Özlem Uzuner, Meliha Yetisgen
Extraction and Analysis of Clinically Important Follow-up Recommendations in a Large Radiology Dataset. CoRR (2019)
Carson Tao, Kahyun Lee, Michele Filannino, Özlem Uzuner
An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction. MedInfo (2019)
Jessica D. Tenenbaum, Ramakanth Kavuluru, Thomas H. McCoy, Özlem Uzuner, Sumithra Velupillai
Clinical Text Mining in Mental Health. AMIA (2019)
Paul Barry, Özlem Uzuner
Deep Learning for Identification of Adverse Effect Mentions In Twitter Data. SMM4H@ACL (2019)
Amber Stubbs, Michele Filannino, Ergin Soysal, Samuel Henry, Özlem Uzuner
Cohort selection for clinical trials: n2c2 2018 shared task track 1. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Kevin Lybarger, Mari Ostendorf, Özlem Uzuner, Meliha Yetisgen
Automatic Identification of Social Determinants of Health from Clinical Records. AMIA (2019)
Kahyun Lee, Michele Filannino, Özlem Uzuner
An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification. MedInfo (2019)
Amber Stubbs, Özlem Uzuner
New approaches to cohort selection. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Michele Filannino, Amber Stubbs, Özlem Uzuner
Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S: S62-S70]. J. Biomed. Informatics 85 (2018)
Michele Filannino, Kahyun Lee, Di Jin, Kevin Buchan, William Boag, Özlem Uzuner
Precision Medicine: matching cancer patients with clinical trials. AMIA (2018)
Kahyun Lee, Michele Filannino, Di Jin, Kevin Buchan, William Boag, Özlem Uzuner
Precision Medicine: matching cancer patients with relevant treatments. AMIA (2018)
Carson Tao, Michele Filannino, Özlem Uzuner
FABLE: A Semi-Supervised Prescription Information Extraction System. AMIA (2018)
Carson Tao, Michele Filannino, Özlem Uzuner
Extracting ADRs from Drug Labels using Bi-LSTM and CRFs. AMIA (2018)
Yuan Luo, Yu Cheng, Özlem Uzuner, Peter Szolovits, Justin Starren
Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. J. Am. Medical Informatics Assoc. 25 (1) (2018)
Franck Dernoncourt, Ji Young Lee, Özlem Uzuner, Peter Szolovits
De-identification of patient notes with recurrent neural networks. J. Am. Medical Informatics Assoc. 24 (3) (2017)
Carson Tao, Michele Filannino, Özlem Uzuner
Prescription extraction using CRFs and word embeddings. J. Biomed. Informatics 72 (2017)
Yuan Ling, Sadid A. Hasan, Michele Filannino, Kevin P. Buchan, Kahyun Lee, Joey Liu, William Boag, Di Jin, Özlem Uzuner, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
A Hybrid Approach to Precision Medicine-related Biomedical Article Retrieval and Clinical Trial Matching. TREC (2017)
Carson Tao, Kahyun Lee, Michele Filannino, Kevin Buchan, Kathy Lee, Tilak Raj Arora, Joey Liu, Oladimeji Farri, Özlem Uzuner
Extracting and Normalizing Adverse Drug Reactions from Drug Labels. TAC (2017)
Kevin Buchan, Michele Filannino, Özlem Uzuner
Automatic prediction of coronary artery disease from clinical narratives. J. Biomed. Informatics 72 (2017)
Yuan Luo, Özlem Uzuner, Peter Szolovits
Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. Briefings Bioinform. 18 (1) (2017)
Yuan Luo, Özlem Uzuner, Peter Szolovits
Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. Briefings Bioinform. 18 (4) (2017)
Ji Young Lee, Franck Dernoncourt, Özlem Uzuner, Peter Szolovits
Feature-Augmented Neural Networks for Patient Note De-identification. CoRR (2016)
Sunita Goel, Özlem Uzuner
Do Sentiments Matter in Fraud Detection? Estimating Semantic Orientation of Annual Reports. Intell. Syst. Account. Finance Manag. 23 (3) (2016)
Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu
Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA (2016)
Ji Young Lee, Franck Dernoncourt, Özlem Uzuner, Peter Szolovits
Feature-Augmented Neural Networks for Patient Note De-identification. ClinicalNLP@COLING 2016 (2016)
Franck Dernoncourt, Ji Young Lee, Özlem Uzuner, Peter Szolovits
De-identification of Patient Notes with Recurrent Neural Networks. CoRR (2016)
Loni Hagen, Teresa M. Harrison, Özlem Uzuner, William May, Tim Fake, Satya Katragadda
E-petition popularity: Do linguistic and semantic factors matter? Gov. Inf. Q. 33 (4) (2016)
Weiyi Sun, Anna Rumshisky, Özlem Uzuner
Normalization of relative and incomplete temporal expressions in clinical narratives. J. Am. Medical Informatics Assoc. 22 (5) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Özlem Uzuner