Timothy A. Miller

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 68

Top Topics

Machine Learning

Natural Language

Unsupervised Grammar Induction

Rheumatoid Arthritis

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Jifan Gao, Guanhua Chen, Ann P. O'Rourke, John R. Caskey, Kyle A. Carey, Madeline Oguss, Anne Stey, Dmitriy Dligach, Timothy A. Miller, Anoop M. Mayampurath, Matthew M. Churpek, Majid Afshar
Automated stratification of trauma injury severity across multiple body regions using multi-modal, multi-class machine learning models. J. Am. Medical Informatics Assoc. 31 (6) (2024)
Andrew J. McMurry, Daniel Gottlieb, Timothy A. Miller, James R. Jones, Ashish Atreja, Jennifer Crago, Pankaja M. Desai, Brian E. Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip R. O. Payne, Anil J. Saldanha, Prabhu R. V. Shankar, Yauheni Solad, Elizabeth Sprouse, Michael Terry, Adam B. Wilcox, Kenneth D. Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. J. Am. Medical Informatics Assoc. 31 (8) (2024)
Weipeng Zhou, Danielle S. Bitterman, Majid Afshar, Timothy A. Miller
Considerations for health care institutions training large language models on electronic health records. CoRR (2023)
Lijing Wang, Yingya Li, Timothy A. Miller, Steven Bethard, Guergana Savova
Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models. ACL (1) (2023)
Shan Chen, Marco Guevara, Shalini Moningi, Frank Hoebers, Hesham Elhalawani, Benjamin H. Kann, Fallon E. Chipidza, Jonathan Leeman, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Maryam Lustberg, Majid Afshar, Danielle S. Bitterman
The impact of using an AI chatbot to respond to patient messages. CoRR (2023)
Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR (2023)
Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142 (2023)
Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller
Improving model transferability for clinical note section classification models using continued pretraining. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Yanjun Gao, Ruizhe Li, John R. Caskey, Dmitriy Dligach, Timothy A. Miller, Matthew M. Churpek, Majid Afshar
Leveraging A Medical Knowledge Graph into Large Language Models for Diagnosis Prediction. CoRR (2023)
Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Guergana Savova
End-to-end clinical temporal information extraction with multi-head attention. BioNLP@ACL (2023)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task. CoRR (2023)
Brihat Sharma, Yanjun Gao, Timothy A. Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. CoRR (2023)
Brihat Sharma, Yanjun Gao, Timothy A. Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach
Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. ClinicalNLP@ACL (2023)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. J. Biomed. Informatics 138 (2023)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. LREC (2022)
Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy A. Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
A scoping review of publicly available language tasks in clinical natural language processing. J. Am. Medical Informatics Assoc. 29 (10) (2022)
Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Delphine S. Tuot, Danielle Bitterman, Timothy A. Miller
Classifying unstructured electronic consult messages to understand primary care physician specialty information needs. J. Am. Medical Informatics Assoc. 29 (9) (2022)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar
Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. CoRR (2022)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, John Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar
DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. CoRR (2022)
Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar
Summarizing Patients Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. CoRR (2022)
Dianbo Liu, Kathe P. Fox, Griffin M. Weber, Timothy A. Miller
Confederated learning in healthcare: Training machine learning models using disconnected data separated by individual, data type and identity for Large-Scale health system Intelligence. J. Biomed. Informatics 134 (2022)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. BioNLP@NAACL-HLT (2021)
Lifeng Jin, Lane Schwartz, Finale Doshi-Velez, Timothy A. Miller, William Schuler
Depth-Bounded Statistical PCFG Induction as a Model of Human Grammar Acquisition. Comput. Linguistics 47 (1) (2021)
Dmitriy Dligach, Majid Afshar, Timothy A. Miller
Pre-training phenotyping classifiers. J. Biomed. Informatics 113 (2021)
Timothy A. Miller, Bin Mao, Dan Gottlieb, Kenneth D. Mandl
The SMART Cumulus Text-to-FHIR NLP Pipeline. AMIA (2021)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics 115 (2021)
Danielle Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond Mak, Guergana Savova
Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP (2020)
Timothy A. Miller, Dmitriy Dligach, Fei Wang, Yuqi Si, Funda Meric-Bernstam
Learning Patient Representations from Electronic Health Records across Diverse Data Types. AMIA (2020)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova
A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. BioNLP (2020)
Dianbo Liu, Timothy A. Miller
Federated pretraining and fine tuning of BERT using clinical notes from multiple silos. CoRR (2020)
Kristin Wright-Bettner, Chen Lin, Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova
Defining and Learning Refined Temporal Relations in the Clinical Narrative. LOUHI@EMNLP (2020)
Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller
Does BERT need domain adaptation for clinical negation detection? J. Am. Medical Informatics Assoc. 27 (4) (2020)
Xin Su, Timothy A. Miller, Majid Afshar, Dmitriy Dligach
Learning Hierarchical Transformer-based Representations of Clinical Notes. AMIA (2020)
Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Timothy A. Miller
Understanding eConsult Triage Behavior with Natural Language Processing. AMIA (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA (2020)
Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR (2020)
Natalia Viani, Timothy A. Miller, Carlo Napolitano, Silvia G. Priori, Guergana K. Savova, Riccardo Bellazzi, Lucia Sacchi
Supervised methods to extract clinical events from cardiology reports in Italian. J. Biomed. Informatics 95 (2019)
Timothy A. Miller
Simplified Neural Unsupervised Domain Adaptation. CoRR (2019)
Kristin Wright-Bettner, Martha Palmer, Guergana Savova, Piet C. de Groen, Timothy A. Miller
Cross-document coreference: An approach to capturing coreference without context. LOUHI@EMNLP (2019)
Dmitriy Dligach, Majid Afshar, Timothy A. Miller
Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Dmitriy Dligach, Majid Afshar, Timothy A. Miller
Towards a Universal Document-Level Clinical Text Encoder: Methods for Neural Network Pre-training with Applications to Substance Misuse. AMIA (2019)
Dianbo Liu, Dmitriy Dligach, Timothy A. Miller
Two-stage Federated Phenotyping and Patient Representation Learning. CoRR (2019)
Timothy A. Miller
Simplified Neural Unsupervised Domain Adaptation. NAACL-HLT (1) (2019)
Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, Lane Schwartz, William Schuler
Unsupervised Learning of PCFGs with Normalizing Flow. ACL (1) (2019)
Dianbo Liu, Dmitriy Dligach, Timothy A. Miller
Two-stage Federated Phenotyping and Patient Representation Learning. BioNLP@ACL (2019)
Dianbo Liu, Timothy A. Miller, Kenneth D. Mandl
Confederated Machine Learning on Horizontally and Vertically Separated Medical Data for Large-Scale Health System Intelligence. CoRR (2019)
Hadi Amiri, Timothy A. Miller, Guergana Savova
Spotting Spurious Data with Neural Networks. NAACL-HLT (2018)
Dmitriy Dligach, Timothy A. Miller
Learning Patient Representations from Text. *SEM@NAACL-HLT (2018)
Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz
Unsupervised Grammar Induction with Depth-bounded PCFG. CoRR (2018)
Dianbo Liu, Timothy A. Miller, Raheel Sayeed, Kenneth D. Mandl
FADL: Federated-Autonomous Deep Learning for Distributed Electronic Health Record. CoRR (2018)
Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz
Unsupervised Grammar Induction with Depth-bounded PCFG. Trans. Assoc. Comput. Linguistics 6 (2018)
Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz
Depth-bounding is effective: Improvements and Evaluation of Unsupervised PCFG Induction. EMNLP (2018)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova
Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. Louhi@EMNLP (2018)
Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz
Depth-bounding is effective: Improvements and evaluation of unsupervised PCFG induction. CoRR (2018)
Dmitriy Dligach, Timothy A. Miller
Learning Patient Representations from Text. CoRR (2018)
Hadi Amiri, Timothy A. Miller, Guergana Savova
Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks. EMNLP (2017)
Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova
Towards generalizable entity-centric clinical coreference resolution. J. Biomed. Informatics 69 (2017)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. BioNLP (2017)
Dmitriy Dligach, Timothy A. Miller, Chen Lin, Steven Bethard, Guergana Savova
Neural Temporal Relation Extraction. EACL (2) (2017)
Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson
DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. AMIA (2017)
Timothy A. Miller, Steven Bethard, Hadi Amiri, Guergana Savova
Unsupervised Domain Adaptation for Clinical Negation Detection. BioNLP (2017)
Natalia Viani, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Carlo Napolitano, Silvia G. Priori, Riccardo Bellazzi, Lucia Sacchi, Guergana K. Savova
Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports. AIME (2017)
Timothy A. Miller, Dmitriy Dligach, Guergana Savova
Unsupervised Document Classification with Informed Topic Models. BioNLP@ACL (2016)
Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova
Multilayered temporal modeling for the clinical domain. J. Am. Medical Informatics Assoc. 23 (2) (2016)
Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova
Feature Portability in Cross-domain Clinical Coreference. AMIA (2016)
Cory Shain, William Bryce, Lifeng Jin, Victoria Krakovna, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz
Memory-Bounded Left-Corner Unsupervised Grammar Induction on Child-Directed Input. COLING (2016)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
Improving Temporal Relation Extraction with Training Instance Augmentation. BioNLP@ACL (2016)
Dmitriy Dligach, Timothy A. Miller, Guergana Savova
Semi-supervised Learning for Phenotyping Tasks. AMIA (2015)
Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova
Extracting Time Expressions from Clinical Text. BioNLP@IJCNLP (2015)
Timothy A. Miller, Sean Finan, Dmitriy Dligach, Guergana Savova
Robust Sentence Segmentation for Clinical Text. AMIA (2015)
Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. 22 (e1) (2015)
William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy A. Miller, Chen Lin, Guergana K. Savova, James Pustejovsky
Temporal Annotation in the Clinical Domain. Trans. Assoc. Comput. Linguistics 2 (2014)
Chen Lin, Timothy A. Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova
Descending-Path Convolution Kernel for Syntactic Structures. ACL (2) (2014)
Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy A. Miller, Guergana K. Savova
Discovering body site and severity modifiers in clinical texts. J. Am. Medical Informatics Assoc. 21 (3) (2014)
Dmitriy Dligach, Timothy A. Miller, Guergana Savova
Active Learning for Phenotyping Tasks. RANLP (Medicine and Biology) (2013)
Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova
Discovering Temporal Narrative Containers in Clinical Text. BioNLP@ACL (2013)
Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova
Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. AMIA (2013)
Stephen T. Wu, Timothy A. Miller, James J. Masanz, Matthew Coarr, David Carrell, Scott R. Halgrim, David Harris, Cheryl Clark
Negation's Not Solved: Reconsidering Negation Annotation and Evaluation. AMIA (2013)
Dmitriy Dligach, Timothy A. Miller, Guergana Savova
Discovering Body Site and Severity Modifiers in Clinical Texts. AMIA (2013)
Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova
Discovering Time Expressions in Clinical Text. AMIA (2013)
Timothy A. Miller, Dmitriy Dligach, Guergana Savova
Active Learning for Coreference Resolution. BioNLP@HLT-NAACL (2012)
Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova
A system for coreference resolution for the clinical narrative. J. Am. Medical Informatics Assoc. 19 (4) (2012)
Dingcheng Li, Timothy A. Miller, William Schuler
A Pronoun Anaphora Resolution System based on Factorial Hidden Markov Models. ACL (2011)
William Schuler, Samir AbdelRahman, Timothy A. Miller, Lane Schwartz
Broad-Coverage Parsing Using Human-Like Memory Constraints. Comput. Linguistics 36 (1) (2010)
Timothy A. Miller, William Schuler
HHMM Parsing with Limited Parallelism. CMCL@ACL (2010)
Timothy A. Miller, Luan Nguyen, William Schuler
Parsing Speech Repair without Specialized Grammar Symbols. ACL/IJCNLP (2) (2009)
William Schuler, Samir AbdelRahman, Timothy A. Miller, Lane Schwartz
Toward a Psycholinguistically-Motivated Model of Language Processing. COLING (2008)
Timothy A. Miller, William Schuler
A Unified Syntactic Model for Parsing Fluent and Disfluent Speech. ACL (2) (2008)
Timothy A. Miller, William Schuler
A Syntactic Time-Series Model for Parsing Fluent and Disfluent Speech. COLING (2008)
Timothy A. Miller, Andrew Exley, William Schuler
Elements of a spoken language programming interface for robots. HRI (2007)
William Schuler, Timothy A. Miller, Stephen T. Wu, Andrew Exley
Dynamic evidence models in a DBN phone recognizer. INTERSPEECH (2006)
Shana Watters, Brian McInnes, David McKoskey, Timothy A. Miller, Daniel Boley, Maria L. Gini, William Schuler, A. Polukeyeva, Jeanette K. Gundel, Sergey V. Pakhomov, Guergana Savova
Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution. AAAI Spring Symposium: Knowledge Collection from Volunteer Contributors (2005)
Shana Watters, Timothy A. Miller, Praveen Balachandran, William Schuler, Richard M. Voyles
Exploiting a sensed environment to improve human-agent communication. AAMAS (2005)
William Schuler, Timothy A. Miller
Integrating denotational meaning into a DBN language model. INTERSPEECH (2005)