Davy Weissenbacher

ORCID

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 25

Top Venues

Bioinform.

J. Am. Medical Informatics Assoc.

CoRR

PSB

Paris 13 University, Villetaneuse, Saint-Denis, Bobigny, France (PHD)

Education History

Paris 13 University, Villetaneuse, Saint-Denis, Bobigny, France

PHD

Publications

Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez
Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics 151 (2024)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023)
Davy Weissenbacher, Juan Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Lucia Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING (2022)
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT (2021)
Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez
Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines. AIME (2021)
Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez
DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. J. Am. Medical Informatics Assoc. 28 (10) (2021)
Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez
Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. 28 (12) (2021)
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36 (20) (2020)
Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING (2020)
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR (2019)
Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT (2019)
Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL (2019)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB (2019)
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Towards scaling Twitter for digital epidemiology of birth defects. npj Digit. Medicine 2 (2019)
Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
Text Mining and Machine Learning for Precision Medicine. PSB (2019)
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. 26 (12) (2019)
Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter. J. Biomed. Informatics 87 (2018)
Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez
Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018. SMM4H@EMNLP (2018)
Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez
Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP (2018)
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research. CoRR (2018)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. 34 (13) (2018)
Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34 (9) (2018)
Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation 2017 (2017)
Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez
Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia. HLT-NAACL (2016)
Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. 23 (5) (2016)
Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. 31 (12) (2015)
Davy Weissenbacher, Christian Raymond
Tree-Structured Named Entities Extraction from Competing Speech Transcriptions. NLDB (2015)
Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez
DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter. SemEval@NAACL-HLT (2015)
Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL (2014)
Davy Weissenbacher, Yutaka Sasaki
Which Factors Contribute to Resolving Coreference Chains with Bayesian Networks?. Int. J. Comput. Linguistics Appl. 4 (2) (2013)
Davy Weissenbacher, Adeline Nazarenko
Understand the effects of erroneous annotations produced by NLP pipelines, a case study on the pronominal anaphora resolution. Trait. Autom. des Langues 52 (1) (2011)
Davy Weissenbacher, Elisa Pieri, Sophia Ananiadou, Brian Rea, Farida Vis, Yuwei Lin, Rob Procter, Peter Halfpenny
ASSIST : un moteur de recherche spécialisé pour l'analyse des cadres d'expériences. TALN (Demonstrations) (2009)
Davy Weissenbacher, Adeline Nazarenko
Identifier les pronoms anaphoriques et trouver leurs antécédents : l'intérêt de la classification bayésienne. TALN (Articles longs) (2007)
Davy Weissenbacher
Les réseaux bayésiens : un formalisme adapté au traitement automatique des langues ? Rev. d'Intelligence Artif. 21 (3) (2007)
Érick Alphonse, Sophie Aubin, Philippe Bessières, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain-Pierre Manine, Claire Nedellec, Mohamed Ould Abdel Vetah, Thierry Poibeau, Davy Weissenbacher
Event-based Information Extraction for the biomedical domain: the Caderige project CoRR (2006)
Davy Weissenbacher
Bayesian Network, a Model for NLP? EACL (2006)
Adeline Nazarenko, Érick Alphonse, Julien Derivière, Thierry Hamon, Guillaume Vauvert, Davy Weissenbacher
The ALVIS Format for Linguistically Annotated Documents. LREC (2006)
Adeline Nazarenko, Érick Alphonse, Julien Derivière, Thierry Hamon, Guillaume Vauvert, Davy Weissenbacher
The ALVIS Format for Linguistically Annotated Documents CoRR (2006)
Sophie Aubin, Julien Derivière, Thierry Hamon, Adeline Nazarenko, Thierry Poibeau, Davy Weissenbacher
Une infrastructure pour l'annotation linguistique de documents issus du web : le projet ALVIS. AAFD (2006)
Davy Weissenbacher
La relation de synonymie en génomique. RECITAL (2004)
Érick Alphonse, Sophie Aubin, Philippe Bessières, Gilles Bisson, Thierry Hamon, Sandrine Lagarrigue, Adeline Nazarenko, Alain-Pierre Manine, Claire Nédellec, Mohamed Ould Abdel Vetah, Thierry Poibeau, Davy Weissenbacher
Event-Based Information Extraction for the Biomedical Domain: the Caderige Project. NLPBA/BioNLP (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Davy Weissenbacher