Yong Chen

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 65

Top Topics

Nonlinear Regression

Electronic Health Records

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

BMC Medical Informatics Decis. Mak.

Publications

Jiayi Tong, Chongliang Luo, Yifei Sun, Rui Duan, M. Elle Saine, Lifeng Lin, Yifan Peng, Yiwen Lu, Anchita Batra, Anni Pan, Olivia Wang, Ruowang Li, Arielle Marks-Anglin, Yuchen Yang, Xu Zuo, Yulun Liu, Jiang Bian, Stephen E. Kimmel, Keith Hamilton, Adam Cuker, Rebecca A. Hubbard, Hua Xu, Yong Chen
Confidence score: a data-driven measure for inclusive systematic reviews considering unpublished preprints. J. Am. Medical Informatics Assoc. 31 (4) (2024)
Jun Yu, Zhaoming Kong, Kun Chen, Xin Zhang, Yong Chen, Lifang He
A Multilinear Least-Squares Formulation for Sparse Tensor Canonical Correlation Analysis. Trans. Mach. Learn. Res. 2024 (2024)
Dazheng Zhang, Jiayi Tong, Ronen Stein, Yiwen Lu, Naimin Jing, Yuchen Yang, Mary Regina Boland, Chongliang Luo, Robert N. Baldassano, Raymond J. Carroll, Christopher B. Forrest, Yong Chen
One-shot distributed algorithms for addressing heterogeneity in competing risks data across clinical sites. J. Biomed. Informatics 150 (2024)
Dazheng Zhang, Jiayi Tong, Naimin Jing, Yuchen Yang, Chongliang Luo, Yiwen Lu, Dimitri A. Christakis, Diana Güthe, Mady Hornig, Kelly J. Kelleher, Keith E. Morse, Colin M. Rogerson, Jasmin Divers, Raymond J. Carroll, Christopher B. Forrest, Yong Chen
Learning competing risks across multiple hospitals: one-shot distributed algorithms. J. Am. Medical Informatics Assoc. 31 (5) (2024)
Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness. J. Biomed. Informatics 153 (2024)
Huan He, William Hao, Yuanzhe Xi, Yong Chen, Bradley A. Malin, Joyce C. Ho
A Flexible Generative Model for Heterogeneous Tabular EHR with Missing Modality. ICLR (2024)
Yiwen Lu, Jiayi Tong, Jessica Chubak, Thomas Lumley, Rebecca A. Hubbard, Hua Xu, Yong Chen
Leveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data. J. Biomed. Informatics 157 (2024)
Jun Yu, Yutong Dai, Xiaokang Liu, Jin Huang, Yishan Shen, Ke Zhang, Rong Zhou, Eashan Adhikarla, Wenxuan Ye, Yixin Liu, Zhaoming Kong, Kai Zhang, Yilong Yin, Vinod Namboodiri, Brian D. Davison, Jason H. Moore, Yong Chen
Unleashing the Power of Multi-Task Learning: A Comprehensive Survey Spanning Traditional, Deep, and Pretrained Foundation Model Eras. CoRR (2024)
Jiayi Tong, Yishan Shen, Alice Xu, Xing He, Chongliang Luo, Mackenzie J. Edmondson, Dazheng Zhang, Yiwen Lu, Chao Yan, Ruowang Li, Lianne Siegel, Lichao Sun, Elizabeth A. Shenkman, Sally C. Morton, Bradley A. Malin, Jiang Bian, David A. Asch, Yong Chen
Evaluating site-of-care-related racial disparities in kidney graft failure using a novel federated learning framework. J. Am. Medical Informatics Assoc. 31 (6) (2024)
Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. 39 (9) (2023)
Qiong Wu, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, George Hripcsak, Charles A. Rohde, Yong Chen
Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes. J. Biomed. Informatics 145 (2023)
Zhaoyi Chen, Yuchen Yang, Dazheng Zhang, Jingchuan Guo, Yi Guo, Xia Hu, Yong Chen, Jiang Bian
Predicting the Risk of Alzheimer's Disease and Related Dementia in Patients with Mild Cognitive Impairment Using a Semi-Competing Risk Approach. Informatics 10 (2) (2023)
Yan Hu, Yong Chen, Hua Xu
Towards More Generalizable and Accurate Sentence Classification in Medical Abstracts with Less Data. J. Heal. Informatics Res. 7 (4) (2023)
Yizhao Zhou, Jiasheng Shi, Ronen Stein, Xiaokang Liu, Robert N. Baldassano, Christopher B. Forrest, Yong Chen, Jing Huang
Missing data matter: an empirical evaluation of the impacts of missing EHR data in comparative effectiveness research. J. Am. Medical Informatics Assoc. 30 (7) (2023)
Xiaokang Liu, Jessica Chubak, Rebecca A. Hubbard, Yong Chen
SAT: a Surrogate-Assisted Two-wave case boosting sampling method, with application to EHR-based association studies. J. Am. Medical Informatics Assoc. 29 (5) (2022)
Jiayi Tong, Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Mackenzie J. Edmondson, Peter A. Merkel, Ebbing Lautenbach, Rui Duan, Yong Chen
Distributed learning for heterogeneous clinical data with application to integrating COVID-19 data across 230 sites. npj Digit. Medicine 5 (2022)
Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Martijn J. Schuemie, Jalpa A. Doshi, Rachel M. Werner, David A. Asch, Yong Chen
dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling. J. Am. Medical Informatics Assoc. 29 (8) (2022)
Wentao Li, Jiayi Tong, Md. Monowar Anjum, Noman Mohammed, Yong Chen, Xiaoqian Jiang
Federated learning algorithms for generalized mixed-effects model (GLMM) on horizontally partitioned data from distributed sources. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Jun Yu, Benjamin Zalatan, Yong Chen, Li Shen, Lifang He
Tensor-Based Multi-Modal Multi-Target Regression for Alzheimer's Disease Prediction. BIBM (2022)
Mackenzie J. Edmondson, Chongliang Luo, Md. Nazmul Islam, Natalie E. Sheils, John Buresh, Zhaoyi Chen, Jiang Bian, Yong Chen
Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks. J. Biomed. Informatics 131 (2022)
Andrew A. Chen, Chongliang Luo, Yong Chen, Russell T. Shinohara, Haochang Shou
Privacy-preserving harmonization via distributed ComBat. NeuroImage 248 (2022)
Sicong Che, Zhaoming Kong, Hao Peng, Lichao Sun, Alex D. Leow, Yong Chen, Lifang He
Federated Multi-view Learning for Private Medical Data Integration and Analysis. ACM Trans. Intell. Syst. Technol. 13 (4) (2022)
Maria Laura Delle Monache, Karen Chi, Yong Chen, Paola Goatin, Ke Han, Jing-Mei Qiu, Benedetto Piccoli
A Three-Phase Fundamental Diagram from Three-Dimensional Traffic Data. Axioms 10 (1) (2021)
Rebecca A. Hubbard, Jinyu Xu, Robert Siegel, Yong Chen, Ihuoma Eneli
Studying pediatric health outcomes with electronic health records using Bayesian clustering and trajectory analysis. J. Biomed. Informatics 113 (2021)
Xu Zuo, Yong Chen, Lucila Ohno-Machado, Hua Xu
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles. Briefings Bioinform. 22 (2) (2021)
Aditya Mishra, Dipak K. Dey, Yong Chen, Kun Chen
Generalized co-sparse factor regression. Comput. Stat. Data Anal. 157 (2021)
Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Ziyan Yin, Jiayi Tong, Yong Chen, Rebecca A. Hubbard, Cheng Yong Tang
A cost-effective chart review sampling design to account for phenotyping error in electronic health records (EHR) data. J. Am. Medical Informatics Assoc. 29 (1) (2021)
Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Jiayi Tong, Jing Huang, Jessica Chubak, Xuan Wang, Jason H. Moore, Rebecca A. Hubbard, Yong Chen
An augmented estimation procedure for EHR-based association studies accounting for differential misclassification. J. Am. Medical Informatics Assoc. 27 (2) (2020)
Jason H. Moore, Randal S. Olson, Peter Schmitt, Yong Chen, Elisabetta Manduchi
How Computational Experiments Can Improve Our Understanding of the Genetic Architecture of Common Human Diseases. Artif. Life 26 (1) (2020)
Jiayi Tong, Zhaoyi Chen, Rui Duan, Wei-Hsuan Lo-Ciganic, Tianchen Lyu, Cui Tao, Peter A. Merkel, Henry R. Kranzler, Jiang Bian, Yong Chen
Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network. AMIA (2020)
Ruowang Li, Jiayi Tong, Rui Duan, Yong Chen, Jason H. Moore
Evaluation of Phenotyping Errors on Polygenic Risk Score Predictions. BIOINFORMATICS (2020)
Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Jason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen, Ryan J. Urbanowicz, John H. Holmes
Ideas for how informaticians can get involved with COVID-19 research. BioData Min. 13 (1) (2020)
Rui Duan, Zhaoyi Chen, Jiayi Tong, Chongliang Luo, Tianchen Lyu, Cui Tao, Demetrius Maraganore, Jiang Bian, Yong Chen
Leverage Real-World Longitudinal Data in Large Clinical Research Networks for Alzheimer's Disease and Related Dementia (ADRD). AMIA (2020)
Yong Chen, Lili Huang, Yue Liu
On the Modelling of Shallow-Water Waves with the Coriolis Effect. J. Nonlinear Sci. 30 (1) (2020)
Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients. Health Informatics J. 26 (2) (2020)
Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif O. Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux
SCOR: A secure international informatics infrastructure to investigate COVID-19. J. Am. Medical Informatics Assoc. 27 (11) (2020)
Jiayi Tong, Rui Duan, Ruowang Li, Martijn J. Scheuemie, Jason H. Moore, Yong Chen
Robust-ODAL: Learning from Heterogeneous Health Systems Without Sharing Patient-LevelData. PSB (2020)
Ruowang Li, Rui Duan, Daniel J. Rader, Scott M. Damrauer, Jason H. Moore, Yong Chen
A regression framework to uncover pleiotropy in large-scale electronic health record data. J. Am. Medical Informatics Assoc. 26 (10) (2019)
Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Cui Tao, Yong Chen
Comparing drug safety of hepatitis C therapies using post-market data. BMC Medical Informatics Decis. Mak. (4) (2019)
Rui Duan, Yang Ning, Yong Chen
Heterogeneity-aware and communication-efficient distributed statistical inference. CoRR (2019)
Ruowang Li, Yong Chen, Jason H. Moore
Integration of genetic and clinical information to improve imputation of data missing from electronic health records. J. Am. Medical Informatics Assoc. 26 (10) (2019)
Jason H. Moore, Randal S. Olson, Yong Chen, Moshe Sipper
Automated discovery of test statistics using genetic programming. Genet. Program. Evolvable Mach. 20 (1) (2019)
Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao
Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning. CoRR (2019)
Muhammad Amith, Anna Zhu, Rachel Cunningham, Rebecca Lin, Lara S. Savas, Laura Shay, Yong Chen, Yang Gong, Julie Boom, Kirk Roberts, Cui Tao
Early Usability Assessment of a Conversational Agent for HPV Vaccination. ITCH (2019)
Jason H. Moore, Randal S. Olson, Yong Chen, Moshe Sipper
Discovering test statistics using genetic programming. GECCO (Companion) (2019)
Rui Duan, Mary Regina Boland, Jason H. Moore, Yong Chen
ODAL: A one-shot distributed algorithm to perform logistic regressions on electronic health records data from multiple clinical sites. PSB (2019)
Jingcheng Du, Rachel Cunningham, Yang Xiang, Fang Li, Yuxi Jia, Julie A. Boom, Sahiti Myneni, Jiang Bian, Chongliang Luo, Yong Chen, Cui Tao
Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media. npj Digit. Medicine 2 (2019)
Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
Text Mining and Machine Learning for Precision Medicine. PSB (2019)
Ming Cao, Yong Chen, Kayo Fujimoto, Michael Schweinberger
A Two-Stage Working Model Strategy for Network Analysis Under Hierarchical Exponential Random Graph Models. ASONAM (2018)
Jason H. Moore, Randal S. Olson, Peter Schmitt, Yong Chen, Elisabetta Manduchi
How computational thought experiments can improve our understanding of the genetic architecture of common human diseases. ALIFE (2018)
Xinyuan Zhang, Rui Duan, Jingcheng Du, Jing Huang, Yong Chen, Cui Tao
Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients. ICHI Workshops (2018)
Jing Huang, Rui Duan, Rebecca A. Hubbard, Yonghui Wu, Jason H. Moore, Hua Xu, Yong Chen
PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data. J. Am. Medical Informatics Assoc. 25 (3) (2018)
Rebecca Lin, Muhammad Amith, Chen Liang, Rui Duan, Yong Chen, Cui Tao
Visualized Emotion Ontology: a model for representing visual cues of emotions. BMC Medical Informatics Decis. Mak. 18 (S-2) (2018)
Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen
Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS. AMIA (2018)
Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
Comparing adverse effects of Hepatitis C drugs using FAERS data. BIBM (2018)
Jingcheng Du, Jing Huang, Rui Duan, Yong Chen, Cui Tao
Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression. MedInfo (2017)
Hokeun Sun, Ya Wang, Yong Chen, Yun Li, Shuang Wang
pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data. Bioinform. 33 (12) (2017)
Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS. DMBD (2017)
Yi Cai, Jingcheng Du, Jing Huang, Susan S. Ellenberg, Sean Hennessy, Cui Tao, Yong Chen
A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data. BMC Medical Informatics Decis. Mak. 17 (2) (2017)
Jing Huang, Xinyuan Zhang, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data. MedInfo (2017)
Rui Duan, Ming Cao, Yonghui Wu, Jing Huang, Joshua C. Denny, Hua Xu, Yong Chen
An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies. AMIA (2016)
Jingcheng Du, Yi Cai, Yong Chen, Cui Tao
Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011. J. Biomed. Semant. 7 (2016)
Cui Tao, Jingcheng Du, Yi Cai, Yong Chen
Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data. MedInfo (2015)
Pan Tong, Yong Chen, Xiao Su, Kevin R. Coombes
SIBER: systematic identification of bimodally expressed genes using RNAseq data. Bioinform. 29 (5) (2013)