Russell T. Shinohara

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 44

Top Topics

Lesion Segmentation

Multiple Sclerosis

Top Venues

Medical Imaging: Computer-Aided Diagnosis

Medical Image Anal.

Publications

Kevin Xie, William K. S. Ojemann, Ryan S. Gallagher, Russell T. Shinohara, Alfredo Lucas, Chloe E. Hill, Roy H. Hamilton, Kevin B. Johnson, Dan Roth, Brian Litt, Colin A. Ellis
Disparities in seizure outcomes revealed by large language models. J. Am. Medical Informatics Assoc. 31 (6) (2024)
Chunrui Zou, Walter C. Mankowski, Lauren Pantalone, Shefali Setia Verma, Eduardo Jose Mortani Barbosa Jr., Tessa S. Cook, Peter B. Noël, Erica L. Carpenter, Jeffrey C. Thompson, Russell T. Shinohara, Sharyn Katz, Despina Kontos
A radiomics-based model for the outcome prediction in COVID-19 positive patients through deep learning with both longitudinal chest x-ray and chest computed tomography images. Medical Imaging: Computer-Aided Diagnosis (2023)
Chenying Zhao, Tinashe M. Tapera, Joëlle Bagautdinova, Josiane Bourque, Sydney Covitz, Raquel E. Gur, Ruben C. Gur, Bart Larsen, Kahini Mehta, Steven L. Meisler, Kristin Murtha, John Muschelli, David R. Roalf, Valerie J. Sydnor, Alessandra M. Valcarcel, Russell T. Shinohara, Matthew Cieslak, Theodore D. Satterthwaite
ModelArray: An R package for statistical analysis of fixel-wise data. NeuroImage 271 (2023)
Fengling Hu, Andrew A. Chen, Hannah Horng, Vishnu Bashyam, Christos Davatzikos, Aaron Alexander-Bloch, Mingyao Li, Haochang Shou, Theodore D. Satterthwaite, Meichen Yu, Russell T. Shinohara
Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization. NeuroImage 274 (2023)
Hannah Horng, Despina Kontos, Russell T. Shinohara
MultiComBat: ComBat harmonization of multiple batch variables. Medical Imaging: Computer-Aided Diagnosis (2023)
Jan Gertheiss, Russell T. Shinohara
Penalized Non-Linear Canonical Correlation Analysis for Ordinal Data with Application to the International Classification of Functioning, Disability and Health. SDM (2023)
Andrew Y. Revell, Alexander B. Silva, T. Campbell Arnold, Joel M. Stein, Sandhitsu R. Das, Russell T. Shinohara, Danielle S. Bassett, Brian Litt, Kathryn A. Davis
A framework For brain atlases: Lessons from seizure dynamics. NeuroImage 254 (2022)
Apurva Singh, Hannah Horng, Leonid Roshkovan, Michelle Hershman, Russell T. Shinohara, Sharyn Katz, Despina Kontos
Resampling and harmonization for mitigation of heterogeneity in imaging parameters: a comparative study. Medical Imaging: Computer-Aided Diagnosis (2022)
Junhao Wen, Erdem Varol, Aristeidis Sotiras, Zhijian Yang, Ganesh B. Chand, Güray Erus, Haochang Shou, Ahmed Abdulkadir, Gyujoon Hwang, Dominic B. Dwyer, Alessandro Pigoni, Paola Dazzan, René S. Kahn, Hugo G. Schnack, Marcus V. Zanetti, Eva Meisenzahl, Geraldo F. Busatto, Benedicto Crespo-Facorro, Romero-Garcia Rafael, Christos Pantelis, Stephen J. Wood, Chuanjun Zhuo, Russell T. Shinohara, Yong Fan, Ruben C. Gur, Raquel E. Gur, Theodore D. Satterthwaite, Nikolaos Koutsouleris, Daniel H. Wolf, Christos Davatzikos
Multi-scale semi-supervised clustering of brain images: Deriving disease subtypes. Medical Image Anal. 75 (2022)
Hannah Horng, Apurva Singh, Bardia Yousefi, Eric A. Cohen, Babak Haghighi, Sharyn Katz, Peter B. Noël, Russell T. Shinohara, Despina Kontos
Iterative ComBat methods for harmonization of radiomic features. Medical Imaging: Computer-Aided Diagnosis (2022)
Sara Weinstein, Simon N. Vandekar, Erica B. Baller, Danni Tu, Azeez Adebimpe, Tinashe M. Tapera, Ruben C. Gur, Raquel E. Gur, John A. Detre, Armin Raznahan, Aaron Alexander-Bloch, Theodore D. Satterthwaite, Russell T. Shinohara, Jun Young Park
Spatially-enhanced clusterwise inference for testing and localizing intermodal correspondence. NeuroImage 264 (2022)
Francesco La Rosa, Maxence Wynen, Omar Al-Louzi, Erin S. Beck, Till Huelnhagen, Pietro Maggi, Jean-Philippe Thiran, Tobias Kober, Russell T. Shinohara, Pascal Sati, Daniel S. Reich, Cristina Granziera, Martina Absinta, Meritxell Bach Cuadra
Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: emerging machine learning techniques and future avenues. CoRR (2022)
Andrew A. Chen, Chongliang Luo, Yong Chen, Russell T. Shinohara, Haochang Shou
Privacy-preserving harmonization via distributed ComBat. NeuroImage 248 (2022)
Andrew A. Chen, Dhivya Srinivasan, Raymond Pomponio, Yong Fan, Ilya M. Nasrallah, Susan M. Resnick, Lori L. Beason-Held, Christos Davatzikos, Theodore D. Satterthwaite, Dani S. Bassett, Russell T. Shinohara, Haochang Shou
Harmonizing functional connectivity reduces scanner effects in community detection. NeuroImage 256 (2022)
Sydney Covitz, Tinashe M. Tapera, Azeez Adebimpe, Aaron Alexander-Bloch, Maxwell A. Bertolero, Eric Feczko, Alexandre R. Franco, Raquel E. Gur, Ruben C. Gur, Timothy Hendrickson, Audrey Houghton, Kahini Mehta, Kristin Murtha, Anders Perrone, Tim Robert-Fitzgerald, Jenna M. Schabdach, Russell T. Shinohara, Jacob W. Vogel, Chenying Zhao, Damien A. Fair, Michael P. Milham, Matthew Cieslak, Theodore D. Satterthwaite
Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. NeuroImage 263 (2022)
José Marcio Luna, Andrew R. Barsky, Russell T. Shinohara, Alexandra D. Dreyfuss, Leonid Roshkovan, Michelle Hershman, Babak Haghighi, Bardia Yousefi, Peter B. Noël, Keith A. Cengel, Sharyn Katz, Eric S. Diffenderfer, Despina Kontos
Radiomic features predict local failure-free survival in stage III NSCLC adenocarcinoma treated with chemoradiation. Medical Imaging: Computer-Aided Diagnosis (2021)
Ujjwal Baid, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Evan Calabrese, Errol Colak, Keyvan Farahani, Jayashree Kalpathy-Cramer, Felipe C. Kitamura, Sarthak Pati, Luciano M. Prevedello, Jeffrey D. Rudie, Chiharu Sako, Russell T. Shinohara, Timothy Bergquist, Rong Chai, James Eddy, Julia Elliott, Walter Reade, Thomas Schaffter, Thomas Yu, Jiaxin Zheng, BraTS Annotators, Christos Davatzikos, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, John B. Freymann, Justin S. Kirby, Benedikt Wiestler, Priscila Crivellaro, Rivka R. Colen, Aikaterini Kotrotsou, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Hassan M. Fathallah-Shaykh, Roland Wiest, András Jakab, Marc-André Weber, Abhishek Mahajan, Bjoern H. Menze, Adam E. Flanders, Spyridon Bakas
The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification. CoRR (2021)
Arkaprava Roy, Brian J. Reich, Joseph Guinness, Russell T. Shinohara, Ana-Maria Staicu
Spatial Shrinkage Via the Product Independent Gaussian Process Prior. J. Comput. Graph. Stat. 30 (4) (2021)
Jordan D. Dworkin, Kristin A. Linn, Erin G. Teich, Perry Zurn, Russell T. Shinohara, Danielle S. Bassett
The extent and drivers of gender imbalance in neuroscience reference lists. CoRR (2020)
Ari M. Fish, Ajay Nadig, Jakob Seidlitz, Paul K. Reardon, Catherine Mankiw, Cassidy L. McDermott, Jonathan D. Blumenthal, Liv S. Clasen, François Lalonde, Jason P. Lerch, M. Mallar Chakravarty, Russell T. Shinohara, Armin Raznahan
Sex-biased trajectories of amygdalo-hippocampal morphology change over human development. NeuroImage 204 (2020)
Spyridon Bakas, Gaurav Shukla, Hamed Akbari, Güray Erus, Aristeidis Sotiras, Saima Rathore, Chiharu Sako, Sung Min Ha, Martin Rozycki, Ashish Singh, Russell T. Shinohara, Michel Bilello, Christos Davatzikos
Integrative radiomic analysis for pre-surgical prognostic stratification of glioblastoma patients: from advanced to basic MRI protocols. Medical Imaging: Image-Guided Procedures (2020)
Joaquim Radua, Eduard Vieta, Russell T. Shinohara, Peter V. Kochunov, Yann Quidé, Melissa J. Green, Cynthia S. Weickert, Thomas Weickert, Jason Bruggemann, Tilo Kircher, Igor Nenadic, Murray J. Cairns, Marc L. Seal, Ulrich Schall, Frans Henskens, Janice M. Fullerton, Bryan J. Mowry, Christos Pantelis, Julian Pineda-Zapata
Increased power by harmonizing structural MRI site differences with the ComBat batch adjustment method in ENIGMA. NeuroImage 218 (2020)
Joanne C. Beer, Nicholas J. Tustison, Philip A. Cook, Christos Davatzikos, Yvette I. Sheline, Russell T. Shinohara, Kristin A. Linn
Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data. NeuroImage 220 (2020)
Sarthak Pati, Ashish Singh, Saima Rathore, Aimilia Gastounioti, Mark Bergman, Phuc Ngo, Sung Min Ha, Dimitrios Bounias, James Minock, Grayson Murphy, Hongming Li, Amit Bhattarai, Adam Wolf, Patmaa Sridaran, Ratheesh Kalarot, Hamed Akbari, Aristeidis Sotiras, Siddhesh P. Thakur, Ragini Verma, Russell T. Shinohara, Paul A. Yushkevich, Yong Fan, Despina Kontos, Christos Davatzikos, Spyridon Bakas
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview. BrainLes@MICCAI (2) (2019)
Huahong Zhang, Alessandra M. Valcarcel, Rohit Bakshi, Renxin Chu, Francesca Bagnato, Russell T. Shinohara, Kilian Hett, Ipek Oguz
Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices. MICCAI (3) (2019)
Adon F. G. Rosen, David R. Roalf, Kosha Ruparel, Jason Blake, Kevin Seelaus, Lakshmi P. Villa, Rastko Ciric, Philip A. Cook, Christos Davatzikos, Mark A. Elliott, Angel Garcia de La Garza, Efstathios D. Gennatas, Megan Quarmley, J. Eric Schmitt, Russell T. Shinohara, M. Dylan Tisdall, R. Cameron Craddock, Raquel E. Gur, Theodore D. Satterthwaite
Quantitative assessment of structural image quality. NeuroImage 169 (2018)
Jordan D. Dworkin, Russell T. Shinohara, Danielle S. Bassett
The emergent integrated network structure of scientific research. CoRR (2018)
Jean-Philippe Fortin, Nicholas C. Cullen, Yvette I. Sheline, Warren D. Taylor, Irem Aselcioglu, Philip A. Cook, Phil Adams, Crystal Cooper, Maurizio Fava, Patrick J. McGrath, Melvin G. McInnis, Mary L. Phillips, Madhukar H. Trivedi, Myrna M. Weissman, Russell T. Shinohara
Harmonization of cortical thickness measurements across scanners and sites. NeuroImage 167 (2018)
Jordan D. Dworkin, Russell T. Shinohara, Danielle S. Bassett
The landscape of NeuroImage-ing research. CoRR (2018)
Jordan D. Dworkin, Russell T. Shinohara, Danielle S. Bassett
-ing research. NeuroImage 183 (2018)
Aaron Alexander-Bloch, Haochang Shou, Siyuan Liu, Theodore D. Satterthwaite, David C. Glahn, Russell T. Shinohara, Simon N. Vandekar, Armin Raznahan
On testing for spatial correspondence between maps of human brain structure and function. NeuroImage 178 (2018)
Alessandra M. Valcarcel, Kristin A. Linn, Fariha Khalid, Simon N. Vandekar, Shahamat Tauhid, Theodore D. Satterthwaite, John Muschelli, Rohit Bakshi, Russell T. Shinohara
MIMoSA: An Approach to Automatically Segment T2 Hyperintense and T1 Hypointense Lesions in Multiple Sclerosis. BrainLes@MICCAI (1) (2018)
Greg M. Fleishman, Alessandra Valcarcel, Dzung L. Pham, Snehashis Roy, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Ipek Oguz
Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation. BrainLes@MICCAI (2017)
Rastko Ciric, Daniel H. Wolf, Jonathan D. Power, David R. Roalf, Graham L. Baum, Kosha Ruparel, Russell T. Shinohara, Mark A. Elliott, Simon B. Eickhoff, Christos Davatzikos, Ruben C. Gur, Raquel E. Gur, Danielle S. Bassett, Theodore D. Satterthwaite
Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity. NeuroImage 154 (2017)
Ipek Oguz, Aaron Carass, Dzung L. Pham, Snehashis Roy, Nagesh Subbana, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Jerry L. Prince
Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation. BrainLes@MICCAI (2017)
Jean-Philippe Fortin, Drew Parker, Birkan Tunç, Takanori Watanabe, Mark A. Elliott, Kosha Ruparel, David R. Roalf, Theodore D. Satterthwaite, Ruben C. Gur, Raquel E. Gur, Robert T. Schultz, Ragini Verma, Russell T. Shinohara
Harmonization of multi-site diffusion tensor imaging data. NeuroImage 161 (2017)
Baris U. Oguz, Russell T. Shinohara, Paul A. Yushkevich, Ipek Oguz
Gradient Boosted Trees for Corrective Learning. MLMI@MICCAI (2017)
Mengjin Dong, Ipek Oguz, Nagesh Subbana, Peter A. Calabresi, Russell T. Shinohara, Paul A. Yushkevich
Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion. Patch-MI@MICCAI (2017)
Amanda F. Mejia, Elizabeth M. Sweeney, Blake Dewey, Govind Nair, Pascal Sati, Colin Shea, Daniel S. Reich, Russell T. Shinohara
relaxation times using conventional magnetic resonance imaging. NeuroImage 133 (2016)
Simon N. Vandekar, Russell T. Shinohara, Armin Raznahan, Ryan Hopson, David R. Roalf, Kosha Ruparel, Ruben C. Gur, Raquel E. Gur, Theodore D. Satterthwaite
Subject-level measurement of local cortical coupling. NeuroImage 133 (2016)
Kristin A. Linn, Bilwaj Gaonkar, Theodore D. Satterthwaite, Jimit Doshi, Christos Davatzikos, Russell T. Shinohara
Control-group feature normalization for multivariate pattern analysis of structural MRI data using the support vector machine. NeuroImage 132 (2016)
Ke Zeng, Güray Erus, Aristeidis Sotiras, Russell T. Shinohara, Christos Davatzikos
Abnormality Detection via Iterative Deformable Registration and Basis-Pursuit Decomposition. IEEE Trans. Medical Imaging 35 (8) (2016)
Anisha Keshavan, Friedemann Paul, Mona K. Beyer, Alyssa H. Zhu, Nico Papinutto, Russell T. Shinohara, William Stern, Michael Amann, Rohit Bakshi, Antje Bischof, Alessandro Carriero, Manuel Comabella, Jason C. Crane, Sandra D'Alfonso, Philippe Demaerel, Benedicte Dubois, Massimo Filippi, Vinzenz Fleischer, Bertrand Fontaine, Laura Gaetano, An Goris, Christiane Graetz, Adriane Gröger, Sergiu Groppa, David A. Hafler, Hanne F. Harbo, Bernhard Hemmer, Kesshi Jordan, Ludwig Kappos, Gina Kirkish, Sara Llufriu, Stefano Magon, Filippo Martinelli-Boneschi, Jacob L. McCauley, Xavier Montalban, Mark Mühlau, Daniel Pelletier, Pradip M. Pattany, Margaret A. Pericak-Vance, Isabelle Cournu-Rebeix, Maria Assunta Rocca, Alex Rovira, Regina Schlaeger, Albert Saiz, Till Sprenger, Alessandro Stecco, Bernard M. J. Uitdehaag, Pablo Villoslada, Mike P. Wattjes, Howard L. Weiner, Jens Wuerfel, Claus Zimmer, Frauke Zipp, Stephen L. Hauser, Jorge R. Oksenberg, Roland G. Henry
Power estimation for non-standardized multisite studies. NeuroImage 134 (2016)
Jean-Philippe Fortin, Elizabeth M. Sweeney, John Muschelli, Ciprian M. Crainiceanu, Russell T. Shinohara
Removing inter-subject technical variability in magnetic resonance imaging studies. NeuroImage 132 (2016)
Bilwaj Gaonkar, Russell T. Shinohara, Christos Davatzikos
Interpreting support vector machine models for multivariate group wise analysis in neuroimaging. Medical Image Anal. 24 (1) (2015)
Dongjin Kwon, Russell T. Shinohara, Hamed Akbari, Christos Davatzikos
Combining Generative Models for Multifocal Glioma Segmentation and Registration. MICCAI (1) (2014)
Russell T. Shinohara, Ciprian S. Crainiceanu, Brian S. Caffo, Daniel S. Reich
Information Criteria for Dynamic Contrast-Enhanced Magnetic Resonance Imaging. PRNI (2013)
Russell T. Shinohara, Ciprian M. Crainiceanu, Brian S. Caffo, María Inés Gaitán, Daniel S. Reich
Population-wide principal component-based quantification of blood-brain-barrier dynamics in multiple sclerosis. NeuroImage 57 (4) (2011)