Zhiyong Lu

ORCID

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 240

Top Venues

CoRR

Database J. Biol. Databases Curation

AMIA

Bioinform.

Publications

Tejas Sudharshan Mathai, Thomas C. Shen, Daniel C. Elton, Sungwon Lee, Zhiyong Lu, Ronald M. Summers
Detection of abdominopelvic lymph nodes in multi-parametric MRI. Comput. Medical Imaging Graph. 114 (2024)
Zhe He, Balu Bhasuran, Qiao Jin, Shubo Tian, Karim Hanna, Cindy Shavor, Lisbeth Y. Garcia Arguello, Patrick Murray, Zhiyong Lu
Quality of Answers of Generative Large Language Models vs Peer Patients for Interpreting Lab Test Results for Lay Patients: Evaluation Study. CoRR (2024)
Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge
EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR (2024)
Yu Yin, Hyunjae Kim, Xiao Xiao, Chih-Hsuan Wei, Jaewoo Kang, Zhiyong Lu, Hua Xu, Meng Fang, Qingyu Chen
Augmenting Biomedical Named Entity Recognition with General-domain Resources. CoRR (2024)
Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases. CoRR (2024)
Tejas Sudharshan Mathai, Sungwon Lee, Thomas C. Shen, Daniel C. Elton, Zhiyong Lu, Ronald M. Summers
Universal detection and segmentation of lymph nodes in multi-parametric MRI. Int. J. Comput. Assist. Radiol. Surg. 19 (1) (2024)
Guangzhi Xiong, Qiao Jin, Zhiyong Lu, Aidong Zhang
Benchmarking Retrieval-Augmented Generation for Medicine. ACL (Findings) (2024)
Xiangru Tang, Qiao Jin, Kunlun Zhu, Tongxin Yuan, Yichi Zhang, Wangchunshu Zhou, Meng Qu, Yilun Zhao, Jian Tang, Zhuosheng Zhang, Arman Cohan, Zhiyong Lu, Mark Gerstein
Prioritizing Safeguarding Over Autonomy: Risks of LLM Agents for Science. CoRR (2024)
Qiao Jin, Fangyuan Chen, Yiliang Zhou, Ziyang Xu, Justin M. Cheung, Robert Chen, Ronald M. Summers, Justin F. Rousseau, Peiyun Ni, Marc J. Landsman, Sally L. Baxter, Subhi J. Al'Aref, Yijia Li, Michael F. Chiang, Yifan Peng, Zhiyong Lu
Hidden Flaws Behind Expert-Level Accuracy of GPT-4 Vision in Medicine. CoRR (2024)
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024)
Qingqing Zhu, Xiuying Chen, Qiao Jin, Benjamin Hou, Tejas Sudharshan Mathai, Pritam Mukherjee, Xin Gao, Ronald M. Summers, Zhiyong Lu
Leveraging Professional Radiologists' Expertise to Enhance LLMs' Evaluation for Radiology Reports. CoRR (2024)
Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness. J. Biomed. Informatics 153 (2024)
Gregory Holste, Mingquan Lin, Ruiwen Zhou, Fei Wang, Lei Liu, Qi Yan, Sarah Van Tassel, Kyle Kovacs, Emily Y. Chew, Zhiyong Lu, Zhangyang Wang, Yifan Peng
Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence modeling. CoRR (2024)
Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR (2024)
Qingqing Zhu, Benjamin Hou, Tejas Sudharshan Mathai, Pritam Mukherjee, Qiao Jin, Xiuying Chen, Zhizheng Wang, Ruida Cheng, Ronald M. Summers, Zhiyong Lu
Decomposing Vision-based LLM Predictions for Auto-Evaluation with GPT-4. CoRR (2024)
Yifan Yang, Mingquan Lin, Han Zhao, Yifan Peng, Furong Huang, Zhiyong Lu
A survey of recent methods for addressing AI fairness and bias in biomedicine. CoRR (2024)
Guangzhi Xiong, Qiao Jin, Zhiyong Lu, Aidong Zhang
Benchmarking Retrieval-Augmented Generation for Medicine. CoRR (2024)
Yifan Yang, Qiao Jin, Furong Huang, Zhiyong Lu
Adversarial Attacks on Large Language Models in Medicine. CoRR (2024)
Gregory Holste, Yiliang Zhou, Song Wang, Ajay Jaiswal, Mingquan Lin, Sherry Zhuge, Yuzhe Yang, Dongkyun Kim, Trong-Hieu Nguyen Mau, Minh-Triet Tran, Jaehyup Jeong, Wongi Park, Jongbin Ryu, Feng Hong, Arsh Verma, Yosuke Yamagishi, Changhyun Kim, Hyeryeong Seo, Myungjoo Kang, Leo Anthony Celi, Zhiyong Lu, Ronald M. Summers, George Shih, Zhangyang Wang, Yifan Peng
Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge. Medical Image Anal. 97 (2024)
Yifan Yang, Xiaoyu Liu, Qiao Jin, Furong Huang, Zhiyong Lu
Unmasking and Quantifying Racial Bias of Large Language Models in Medical Report Generation. CoRR (2024)
Zifeng Wang, Lang Cao, Benjamin P. Danek, Yichi Zhang, Qiao Jin, Zhiyong Lu, Jimeng Sun
Accelerating Clinical Evidence Synthesis with Large Language Models. CoRR (2024)
Qiao Jin, Fangyuan Chen, Yiliang Zhou, Ziyang Xu, Justin M. Cheung, Robert Chen, Ronald M. Summers, Justin F. Rousseau, Peiyun Ni, Marc J. Landsman, Sally L. Baxter, Subhi J. Al'Aref, Yijia Li, Alexander Chen, Josef A. Brejt, Michael F. Chiang, Yifan Peng, Zhiyong Lu
Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine. npj Digit. Medicine 7 (1) (2024)
Nikhil Khandekar, Qiao Jin, Guangzhi Xiong, Soren Dunn, Serina S. Applebaum, Zain Anwar, Maame Sarfo-Gyamfi, Conrad W. Safranek, Abid A Anwar, Andrew Zhang, Aidan Gilson, Maxwell B. Singer, Amisha D. Dave, Andrew Taylor, Aidong Zhang, Qingyu Chen, Zhiyong Lu
MedCalc-Bench: Evaluating Large Language Models for Medical Calculations. CoRR (2024)
Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation 2024 (2024)
Ashley Shin, Qiao Jin, James Anibal, Zhiyong Lu
Harnessing PubMed User Query Logs for Post Hoc Explanations of Recommended Similar Articles. CoRR (2024)
Xiuying Chen, Tairan Wang, Qingqing Zhu, Taicheng Guo, Shen Gao, Zhiyong Lu, Xin Gao, Xiangliang Zhang
Rethinking Scientific Summarization Evaluation: Grounding Explainable Metrics on Facet-aware Benchmark. CoRR (2024)
Qiao Jin, Zhizheng Wang, Yifan Yang, Qingqing Zhu, Donald Wright, Thomas Huang, W. John Wilbur, Zhe He, Andrew Taylor, Qingyu Chen, Zhiyong Lu
AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning. CoRR (2024)
Yifan Yang, Mingquan Lin, Han Zhao, Yifan Peng, Furong Huang, Zhiyong Lu
A survey of recent methods for addressing AI fairness and bias in biomedicine. J. Biomed. Informatics 154 (2024)
Qiao Jin, Yifan Yang, Qingyu Chen, Zhiyong Lu
GeneGPT: augmenting large language models with domain tools for improved access to biomedical information. Bioinform. 40 (2) (2024)
Benjamin Hou, Qingqing Zhu, Tejas Sudarshan Mathai, Qiao Jin, Zhiyong Lu, Ronald M. Summers
Shadow and Light: Digitally Reconstructed Radiographs for Disease Classification. CoRR (2024)
Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng
Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness. CoRR (2023)
Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo, Zhiyong Lu, Peter N. Robinson
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. Bioinform. 39 (12) (2023)
Li Fang, Qingyu Chen, Chih-Hsuan Wei, Zhiyong Lu, Kai Wang
Bioformer: an efficient transformer language model for biomedical text mining. CoRR (2023)
Zhaoyi Sun, Mingquan Lin, Qingqing Zhu, Qianqian Xie, Fei Wang, Zhiyong Lu, Yifan Peng
A scoping review on multimodal deep learning in biomedical images and texts. J. Biomed. Informatics 146 (2023)
Qiao Jin, Robert Leaman, Zhiyong Lu
PubMed and Beyond: Recent Advances and Best Practices in Biomedical Literature Search. CoRR (2023)
Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval. CoRR (2023)
Qiao Jin, Zifeng Wang, Charalampos S. Floudas, Jimeng Sun, Zhiyong Lu
Matching Patients to Clinical Trials with Large Language Models. CoRR (2023)
Robert Leaman, Rezarta Islamaj, Virginia Adams, Mohammed Alliheedi, João Rafael Almeida, Rui Antunes, Robert Bevan, Yung-Chun Chang, Arslan Erdengasileng, Matthew Hodgskiss, Ryuki Ida, Hyunjae Kim, Keqiao Li, Robert E. Mercer, Lukrécia Mertová, Ghadeer Mobasher, Hoo-Chang Shin, Mujeen Sung, Tomoki Tsujimura, Wen-Chao Yeh, Zhiyong Lu
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII. Database J. Biol. Databases Curation 2023 (2023)
Qiao Jin, Andrew Shin, Zhiyong Lu
LADER: Log-Augmented DEnse Retrieval for Biomedical Literature Search. SIGIR (2023)
Xinyue Hu, Lin Gu, Kazuma Kobayashi, Qiyuan An, Qingyu Chen, Zhiyong Lu, Chang Su, Tatsuya Harada, Yingying Zhu
Interpretable Medical Image Visual Question Answering via Multi-Modal Relationship Graph Learning. CoRR (2023)
Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR (2023)
Robert Leaman, Rezarta Islamaj, Alexis Allot, Qingyu Chen, W. John Wilbur, Zhiyong Lu
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning. Patterns 4 (1) (2023)
Qingqing Zhu, Tejas Sudharshan Mathai, Pritam Mukherjee, Yifan Peng, Ronald M. Summers, Zhiyong Lu
Utilizing Longitudinal Chest X-Rays and Reports to Pre-Fill Radiology Reports. CoRR (2023)
Xingsheng Liu, Anhu Li, Jianfeng Sun, Zhiyong Lu
Trigonometric projection statistics histograms for 3D local feature representation and shape description. Pattern Recognit. 143 (2023)
Qiao Jin, Andrew Shin, Zhiyong Lu
LADER: Log-Augmented DEnse Retrieval for Biomedical Literature Search. CoRR (2023)
Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR (2023)
Ashley Shin, Qiao Jin, Zhiyong Lu
Multi-stage Literature Retrieval System Trained by PubMed Search Logs for Biomedical Question Answering. CLEF (Working Notes) (2023)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. 39 (5) (2023)
Zhaoyi Sun, Mingquan Lin, Qingqing Zhu, Qianqian Xie, Fei Wang, Zhiyong Lu, Yifan Peng
A scoping review on multimodal deep learning in biomedical images and texts. CoRR (2023)
Amr S. Elsawy, Tiarnan D. Kenan, Qingyu Chen, Xiaoshuang Shi, Emily Y. Chew, Zhiyong Lu
Attention-based 3D convolutional networks for detection of geographic atrophy from optical coherence tomography scans. Medical Imaging: Image Processing (2023)
Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval. Bioinform. 39 (10) (2023)
Tejas Sudharshan Mathai, Sungwon Lee, Thomas C. Shen, Zhiyong Lu, Ronald M. Summers
Universal lymph node detection in T2 MRI using neural networks. Int. J. Comput. Assist. Radiol. Surg. 18 (2) (2023)
Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry
Database resources of the National Center for Biotechnology Information in 2023. Nucleic Acids Res. 51 (D1) (2023)
Qingqing Zhu, Tejas Sudharshan Mathai, Pritam Mukherjee, Yifan Peng, Ronald M. Summers, Zhiyong Lu
Utilizing Longitudinal Chest X-Rays and Reports to Pre-fill Radiology Reports. MICCAI (5) (2023)
Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu
GNorm2: an improved gene name recognition and normalization system. Bioinform. 39 (10) (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR (2023)
Gregory Holste, Yiliang Zhou, Song Wang, Ajay Jaiswal, Mingquan Lin, Sherry Zhuge, Yuzhe Yang, Dongkyun Kim, Trong-Hieu Nguyen Mau, Minh-Triet Tran, Jaehyup Jeong, Wongi Park, Jongbin Ryu, Feng Hong, Arsh Verma, Yosuke Yamagishi, Changhyun Kim, Hyeryeong Seo, Myungjoo Kang, Leo Anthony Celi, Zhiyong Lu, Ronald M. Summers, George Shih, Zhangyang Wang, Yifan Peng
Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge. CoRR (2023)
Qingyu Chen, Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi, John J. Guerrerio, Lilly Xu, Zhiyong Lu
LitCovid in 2022: an information resource for the COVID-19 literature. Nucleic Acids Res. 51 (D1) (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics 146 (2023)
Qiao Jin, Yifan Yang, Qingyu Chen, Zhiyong Lu
GeneGPT: Teaching Large Language Models to Use NCBI Web APIs. CoRR (2023)
Rui Yang, Qingcheng Zeng, Keen You, Yujie Qiao, Lucas Huang, Chiachun Hsieh, Benjamin Rosand, Jeremy Goldwasser, Amisha D. Dave, Tiarnan D. L. Keenan, Emily Y. Chew, Dragomir Radev, Zhiyong Lu, Hua Xu, Qingyu Chen, Irene Li
MedGen: A Python Natural Language Processing Toolkit for Medical Text Processing. CoRR (2023)
Tejas Sudharshan Mathai, Sungwon Lee, Thomas C. Shen, Zhiyong Lu, Ronald M. Summers
Universal lymph node detection in multiparametric MRI with selective augmentation. Medical Imaging: Computer-Aided Diagnosis (2023)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. 23 (5) (2022)
Xiaoshuang Shi, Yifan Peng, Qingyu Chen, Tiarnan D. Keenan, Alisa T. Thavikulwat, Sungwon Lee, Yuxing Tang, Emily Y. Chew, Ronald M. Summers, Zhiyong Lu
Robust convolutional neural networks against adversarial attacks on medical images. Pattern Recognit. 132 (2022)
Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. CoRR (2022)
Robert Leaman, Rezarta Islamaj Dogan, Alexis Allot, Qingyu Chen, W. John Wilbur, Zhiyong Lu
Comprehensive identification of Long Covid articles with human-in-the-loop machine learning. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR (2022)
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Chih-Hsuan Wei, Alexis Allot, Kevin Riehle, Aleksandar Milosavljevic, Zhiyong Lu
tmVar 3.0: an improved variant concept recognition and normalization tool. CoRR (2022)
Song Wang, Mingquan Lin, Ying Ding, George Shih, Zhiyong Lu, Yifan Peng
Radiology Text Analysis System (RadText): Architecture and Evaluation. CoRR (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu
A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation 2022 (2022) (2022)
Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA (2022)
Andres Diaz-Pinto, Nishant Ravikumar, Rahman Attar, Avan Suinesiaputra, Yitian Zhao, Eylem Levelt, Erica Dall' Armellina, Marco Lorenzi, Qingyu Chen, Tiarnan D. L. Keenan, Elvira Agrón, Emily Y. Chew, Zhiyong Lu, Chris P. Gale, Richard P. Gale, Sven Plein, Alejandro F. Frangi
Predicting myocardial infarction through retinal scans and minimal personal information. Nat. Mach. Intell. 4 (1) (2022)
Shuai Wang, Yingying Zhu, Sungwon Lee, Daniel C. Elton, Thomas C. Shen, Youbao Tang, Yifan Peng, Zhiyong Lu, Ronald M. Summers
Global-Local attention network with multi-task uncertainty loss for abnormal lymph node detection in MR images. Medical Image Anal. 77 (2022)
Qingyu Chen, Tiarnan D. Keenan, Alexis Allot, Sanjeeb Bhandari, Geoff Broadhead, Chantal Cousineau-Krieger, Ellen Davis, William G. Gensheimer, David Grasic, Seema Gupta, Eleni Konstantinou, Tania Lamba, Michele Maiberger, Arnold Oshinsky, Brittany Powell, Boonkit Purt, Soo Shin, Hillary Steifel, Alisa T. Thavikulwat, Keith Wroblewski, Sirisha Koirala, Tom Murickan, Michael F. Chiang, Michelle R. Hribar, Emily Y. Chew, Zhiyong Lu
Automated and Accessible Diagnosis of Age-related Macular Degeneration: a Comparative Analysis of the impact of machine learning models in clinical diagnostic Workflows. AMIA (2022)
Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022 (2022) (2022)
Qiyuan An, Ruijiang Li, Lin Gu, Hao Zhang, Qingyu Chen, Zhiyong Lu, Fei Wang, Yingying Zhu
A Privacy-Preserving Unsupervised Domain Adaptation Framework for Clinical Text Analysis. CoRR (2022)
Qingyu Chen, Tiarnan D. Keenan, Elvira Agrón, Amr S. Elsawy, Emily Y. Chew, Zhiyong Lu
Deep learning automated diagnosis and quantitative classification of cataract type and severity: quantifying the effectiveness and usability of deep learning-assisted disease diagnosis models with 14 ophthalmologists and multi-center validations. AMIA (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA (2022)
Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher J. Lanczycki, Stacy Lathrop, Zhiyong Lu, Françoise Thibaud-Nissen, Terence D. Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry
Database resources of the national center for biotechnology information. Nucleic Acids Res. 50 (D1) (2022)
Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (5) (2022)
Tejas Sudharshan Mathai, Sungwon Lee, Thomas C. Shen, Zhiyong Lu, Ronald M. Summers
Universal Lymph Node Detection in T2 MRI using Neural Networks. CoRR (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR (2022)
Chih-Hsuan Wei, Alexis Allot, Kevin Riehle, Aleksandar Milosavljevic, Zhiyong Lu
tmVar 3.0: an improved variant concept recognition and normalization tool. Bioinform. 38 (18) (2022)
Qingyu Chen, Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi, John J. Guerrerio, Lilly Xu, Zhiyong Lu
LitCovid in 2022: an information resource for the COVID-19 literature. CoRR (2022)
Song Wang, Mingquan Lin, Ying Ding, George Shih, Zhiyong Lu, Yifan Peng
Radiology Text Analysis System (RadText): Architecture and Evaluation. ICHI (2022)
Rezarta Islamaj, Robert Leaman, David Cissel, Cathleen Coss, Joseph Denicola, Carol Fisher, Rob Guzman, Preeti Gokal Kochar, Nicholas Miliaras, Zoe Punske, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Susan Schmidt, Zhiyong Lu
NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles. Database J. Biol. Databases Curation 2022 (2022) (2022)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Towards a unified search: Improving PubMed retrieval with full text. J. Biomed. Informatics 134 (2022)
Tejas Sudharshan Mathai, Sungwon Lee, Daniel C. Elton, Thomas C. Shen, Yifan Peng, Zhiyong Lu, Ronald M. Summers
Lymph node detection in T2 MRI with transformers. Medical Imaging: Computer-Aided Diagnosis (2022)
Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database J. Biol. Databases Curation 2022 (2022) (2022)
Junghwan Lee, Tingyi Wanyan, Qingyu Chen, Tiarnan D. L. Keenan, Benjamin S. Glicksberg, Emily Y. Chew, Zhiyong Lu, Fei Wang, Yifan Peng
Predicting Age-related Macular Degeneration Progression with Longitudinal Fundus Images Using Deep Learning. MLMI@MICCAI (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu
Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation 2022 (2022) (2022)
Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
LitMC-BERT: transformer-based multi-label classification of biomedical literature with an application on COVID-19 literature curation. CoRR (2022)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Measuring the relative importance of full text sections for information retrieval from scientific literature. BioNLP@NAACL-HLT (2021)
Sendong Zhao, Chang Su, Zhiyong Lu, Fei Wang
Recent advances in biomedical literature mining. Briefings Bioinform. 22 (3) (2021)
Xiaoshuang Shi, Fuyong Xing, Kaidi Xu, Pingjun Chen, Yun Liang, Zhiyong Lu, Zhenhua Guo
Loss-Based Attention for Interpreting Image-Level Prediction of Convolutional Neural Networks. IEEE Trans. Image Process. 30 (2021)
Yifan Peng, Yuxing Tang, Sungwon Lee, Yingying Zhu, Ronald M. Summers, Zhiyong Lu
COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature. IEEE Trans. Big Data 7 (1) (2021)
Tejas Sudharshan Mathai, Sungwon Lee, Daniel C. Elton, Thomas C. Shen, Yifan Peng, Zhiyong Lu, Ronald M. Summers
Detection of Lymph Nodes in T2 MRI Using Neural Network Ensembles. MLMI@MICCAI (2021)
Tian Ye, Mingchao Jiang, Yunchen Zhang, Liang Chen, ErKang Chen, Pen Chen, Zhiyong Lu
Perceiving and Modeling Density is All You Need for Image Dehazing. CoRR (2021)

Zhiyong Lu.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Zhiyong Lu