Andrew J. Oler

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 6

Top Topics

Formal Ontologies

Relevant Concepts

Top Venues

J. Biomed. Informatics

Publications

Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA (2022)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37 (13) (2021)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR (2020)
Daniel Veltri, Zhiwen Li, Sandhya Xirasagar, Andrew J. Oler, Xi Cheng, Ke Huang, Jason Barnett, Lingwen Zhang, Octavio Juarez Espinosa, Yongjie Fan, Morgan Similuk, Magdalena Walkiewicz, Celine Hong, Joyce Johnson, Joshua D. Milner
Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System. BCB (2018)
Nick Weber, David Liou, Jennifer Dommer, Philip MacMenamin, Mariam Quiñones, Ian Misner, Andrew J. Oler, Joe Wan, Lewis Kim, Meghan Coakley McCarthy, Samuel Ezeji, Karlynn Noble, Darrell E. Hurt
Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis. Bioinform. 34 (8) (2018)