Po-Ting Lai

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 30

Top Topics

Named Entity Recognition

Biomedical Literature

Relation Extraction

Semantic Role Labeling

Top Venues

Database J. Biol. Databases Curation

Briefings Bioinform.

Publications

Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge
EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR (2024)
Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu
GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases. CoRR (2024)
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024)
Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR (2024)
Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation 2024 (2024)
Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR (2023)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. 39 (5) (2023)
Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu
GNorm2: an improved gene name recognition and normalization system. Bioinform. 39 (10) (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics 146 (2023)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. 23 (5) (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR (2022)
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu
A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation 2022 (2022) (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu
Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation 2022 (2022) (2022)
Po-Ting Lai, Zhiyong Lu
BERT-GT: Cross-sentence n-ary relation extraction with BERT and Graph Transformer. CoRR (2021)
Po-Ting Lai, Zhiyong Lu
BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer. Bioinform. 36 (24) (2021)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37 (13) (2021)
Po-Ting Lai, Yu-Hao Chiu, Chieh-Wen Lu, Kuang-Hsiang Liu, Tung-Liang Chiu, Wendy Chen
Development and Validation of a Novel Reliable Method for Wet Testing on Biochemical Chip. ITC-Asia (2020)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR (2020)
Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu
Biomedical named entity recognition and linking datasets: survey and our recent development. Briefings Bioinform. 21 (6) (2020)
Ming-Siang Huang, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task. CoRR (2019)
Po-Ting Lai, Ming-Siang Huang, Ting-Hao Yang, Wen-Lian Hsu, Richard Tzong-Han Tsai
Statistical principle-based approach for gene and protein related object recognition. J. Cheminformatics 10 (1) (2018)
Jing Cyun Tu, Po-Ting Lai, Richard Tzong-Han Tsai
Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble. DDDSM@IJCNLP (2017)
Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu
MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation 2016 (2016)
Richard Tzong-Han Tsai, Yu-Cheng Hsiao, Po-Ting Lai
NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition. Database J. Biol. Databases Curation 2016 (2016)
Po-Ting Lai, Yu-Yan Lo, Ming-Siang Huang, Yu-Cheng Hsiao, Richard Tzong-Han Tsai
BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text. Database J. Biol. Databases Curation 2016 (2016)
Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai
Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization. J. Cheminformatics 7 (S-1) (2015)
Sheng-Wei Chen, Po-Ting Lai, Yi-Lin Tsai, Jay Kuan-Chieh Chung, Sherry Shih-Huan Hsiao, Richard Tzong-Han Tsai
NCU IISR System for NTCIR-11 MedNLP-2 Task. NTCIR (2014)
Yueh-Lin Yang, Po-Ting Lai, Richard Tzong-Han Tsai
A Hybrid System for Temporal Relation Extraction from Discharge Summaries. TAAI (2014)
Richard Tzong-Han Tsai, Po-Ting Lai
A resource-saving collective approach to biomedical semantic role labeling. BMC Bioinform. 15 (2014)
Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. 19 (5) (2012)
Richard Tzong-Han Tsai, Po-Ting Lai
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection. BMC Bioinform. 12 (S-8) (2011)
Po-Ting Lai, Richard Tzong-Han Tsai
A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction. Inf. Media Technol. 6 (1) (2011)
Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. 12 (2011)
Richard Tzong-Han Tsai, Po-Ting Lai
Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles. BMC Bioinform. 12 (2011)
Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu
Global Ranking via Data Fusion. COLING (Posters) (2010)
Richard Tzong-Han Tsai, Po-Ting Lai
Using Contextual Information to Clarify Cross-Species Gene Normalization Ambiguity. Int. J. Softw. Eng. Knowl. Eng. 20 (2) (2010)
Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai
Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (3) (2010)
Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang
PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinform. 25 (22) (2009)
Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu
Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI (2009)
Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. 10 (S-15) (2009)