Sandhya Xirasagar

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 6

Top Topics

Domain Ontology

Top Venues

Nucleic Acids Res.

Publications

Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Michael Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton L. Dalgard, Stephen J. Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson, Süleyman Cenk Sahinalp
ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data. RECOMB (2022)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37 (13) (2021)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR (2020)
Daniel Veltri, Zhiwen Li, Sandhya Xirasagar, Andrew J. Oler, Xi Cheng, Ke Huang, Jason Barnett, Lingwen Zhang, Octavio Juarez Espinosa, Yongjie Fan, Morgan Similuk, Magdalena Walkiewicz, Celine Hong, Joyce Johnson, Joshua D. Milner
Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System. BCB (2018)
Koenraad Van Doorslaer, Zhiwen Li, Sandhya Xirasagar, Piet Maes, David Kaminsky, David Liou, Qiang Sun, Ramandeep Kaur, Yentram Huyen, Alison A. McBride
The Papillomavirus Episteme: a major update to the papillomavirus sequence database. Nucleic Acids Res. 45 (Database-Issue) (2017)
Koenraad Van Doorslaer, Qina Tan, Sandhya Xirasagar, Sandya Bandaru, Vivek Gopalan, Yasmin Mohamoud, Yentram Huyen, Alison A. McBride
The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis. Nucleic Acids Res. 41 (Database-Issue) (2013)
Michael D. Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost III, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel
CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. Nucleic Acids Res. 36 (Database-Issue) (2008)
Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters
Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application. Bioinform. 22 (7) (2006)
Sandhya Xirasagar, Scott F. Gustafson, B. Alex Merrick, Kenneth B. Tomer, Stanley Stasiewicz, Denny D. Chan, Kenneth J. Yost III, John R. Yates III, Susan Sumner, Nianqing Xiao, Michael D. Waters
CEBS object model for systems biology data, SysBio-OM. Bioinform. 20 (13) (2004)