Pierre R. Bushel

Publication Activity (10 Years)

Years Active: 2001-2017
Publications (10 Years): 1

Top Topics

Gene Expression

Functional Genomics

Top Venues

Source Code Biol. Medicine

BMC Syst. Biol.

Publications

Brian D. Bennett, Pierre R. Bushel
goSTAG: gene ontology subtrees to tag and annotate genes within a set. Source Code Biol. Medicine 12 (1) (2017)
ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward E. Hudgens, Jane E. Gallagher, Stephen W. Edwards
Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes. BMC Syst. Biol. 7 (2013)
Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle. BMC Syst. Biol. 3 (2009)
Pierre R. Bushel
Clustering of Gene Expression Data and End-Point Measurements by Simulated Annealing. J. Bioinform. Comput. Biol. 7 (1) (2009)
Michael D. Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost III, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel
CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. Nucleic Acids Res. 36 (Database-Issue) (2008)
Jeff W. Chou, Tong Zhou, William K. Kaufmann, Richard S. Paules, Pierre R. Bushel
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes. BMC Bioinform. 8 (2007)
Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson
Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes. BMC Syst. Biol. 1 (2007)
Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters
Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application. Bioinform. 22 (7) (2006)
Elo Leung, Pierre R. Bushel
PAGE: phase-shifted analysis of gene expression. Bioinform. 22 (3) (2006)
Jeff W. Chou, Richard S. Paules, Pierre R. Bushel
Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased. J. Bioinform. Comput. Biol. 3 (2) (2005)
Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, James Green, Alan Ableson, Stephen Misener, Cynthia A. Afshari, Richard S. Paules
Computational selection of distinct class- and subclass-specific gene expression signatures. J. Biomed. Informatics 35 (3) (2002)
Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, Stella Sieber, Karla Martin, Emile F. Nuwaysir, Kate Johnson, Kelli Reynolds, Richard S. Paules, Cynthia A. Afshari
MAPS: a microarray project system for gene expression experiment information and data validation. Bioinform. 17 (6) (2001)
Russell D. Wolfinger, Greg Gibson, Elizabeth D. Wolfinger, Lee Bennett, Hisham Hamadeh, Pierre R. Bushel, Cynthia A. Afshari, Richard S. Paules
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models. J. Comput. Biol. 8 (6) (2001)