Shankai Yan

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 21

Top Topics

Transfer Learning

Natural Language Processing

Graph Embedding

Top Venues

J. Biomed. Informatics

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Bin Zhang, Meizhen Luo, Shankai Yan, Juan Hu, Ling Peng, Liangshun Wu, Yujuan Wang
Backbone Feature Hierarchy Selection Strategy and Verification in Small Object Detection. ICMLC (2024)
Zhe Liu, Hiu-Man Wong, Xingjian Chen, Jiecong Lin, Shixiong Zhang, Shankai Yan, Fuzhou Wang, Xiangtao Li, Ka-Chun Wong
MotifHub: Detection of trans-acting DNA motif group with probabilistic modeling algorithm. Comput. Biol. Medicine 168 (2024)
Ruiqi Liu, Zilong Zhang, Xiuhao Fu, Shankai Yan, Feifei Cui
AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies. BIBM (2023)
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA (2022)
Hiu-Man Wong, Xingjian Chen, Hiu-Hin Tam, Jiecong Lin, Shixiong Zhang, Shankai Yan, Xiangtao Li, Ka-Chun Wong
Feature Selection and Feature Extraction: Highlights. ISMSI (2021)
Shankai Yan, Ka-Chun Wong
Future DNA computing device and accompanied tool stack: Towards high-throughput computation. Future Gener. Comput. Syst. 117 (2021)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37 (13) (2021)
Ka-Chun Wong, Shankai Yan, Qiuzhen Lin, Xiangtao Li, Chengbin Peng
Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription Factors. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (1) (2020)
Qingyu Chen, Robert Leaman, Alexis Allot, Ling Luo, Chih-Hsuan Wei, Shankai Yan, Zhiyong Lu
Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP). CoRR (2020)
Qingyu Chen, Kyubum Lee, Shankai Yan, Sun Kim, Chih-Hsuan Wei, Zhiyong Lu
BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale. PLoS Comput. Biol. 16 (4) (2020)
Shankai Yan, Ka-Chun Wong
GESgnExt: Gene Expression Signature Extraction and Meta-Analysis on Gene Expression Omnibus. IEEE J. Biomed. Health Informatics 24 (1) (2020)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR (2020)
Shankai Yan, Ka-Chun Wong
Context awareness and embedding for biomedical event extraction. Bioinform. 36 (2) (2020)
Junyi Chen, Shankai Yan, Ka-Chun Wong
Verbal aggression detection on Twitter comments: convolutional neural network for short-text sentiment analysis. Neural Comput. Appl. 32 (15) (2020)
Yifan Peng, Shankai Yan, Zhiyong Lu
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets. BioNLP@ACL (2019)
Ka-Chun Wong, Jiao Zhang, Shankai Yan, Xiangtao Li, Qiuzhen Lin, Sam Kwong, Cheng Liang
DNA Sequencing Technologies: Sequencing Data Protocols and Bioinformatics Tools. ACM Comput. Surv. 52 (5) (2019)
Qingyu Chen, Kyubum Lee, Shankai Yan, Sun Kim, Chih-Hsuan Wei, Zhiyong Lu
BioConceptVec: creating and evaluating literature-based biomedical concept embeddings on a large scale. CoRR (2019)
Shankai Yan, Ka-Chun Wong
Context awareness and embedding for biomedical event extraction. CoRR (2019)
Yifan Peng, Shankai Yan, Zhiyong Lu
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets. CoRR (2019)
Shankai Yan, Ka-Chun Wong
Elucidating high-dimensional cancer hallmark annotation via enriched ontology. J. Biomed. Informatics 73 (2017)