Kyubum Lee

Publication Activity (10 Years)

Years Active: 2010-2021
Publications (10 Years): 16

Top Topics

Histopathology Images

Biomedical Literature

Medline Abstracts

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Mengyu Xie, Kyubum Lee, John H. Lockhart, Scott D. Cukras, Rodrigo Carvajal, Amer A. Beg, Elsa R. Flores, Mingxiang Teng, Christine H. Chung, Aik Choon Tan
TIMEx: tumor-immune microenvironment deconvolution web-portal for bulk transcriptomics using pan-cancer scRNA-seq signatures. Bioinform. 37 (20) (2021)
Kyubum Lee, John H. Lockhart, Mengyu Xie, Ritu Chaudhary, Robbert J. C. Slebos, Elsa R. Flores, Christine H. Chung, Aik Choon Tan
Deep Learning of Histopathology Images at the Single Cell Level. Frontiers Artif. Intell. 4 (2021)
Kyubum Lee, Chih-Hsuan Wei, Zhiyong Lu
Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature. Briefings Bioinform. 22 (3) (2021)
Alexis Allot, Kyubum Lee, Qingyu Chen, Ling Luo, Zhiyong Lu
LitSuggest: a web-based system for literature recommendation and curation using machine learning. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Qingyu Chen, Kyubum Lee, Shankai Yan, Sun Kim, Chih-Hsuan Wei, Zhiyong Lu
BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale. PLoS Comput. Biol. 16 (4) (2020)
Chih-Hsuan Wei, Kyubum Lee, Robert Leaman, Zhiyong Lu
Biomedical Mention Disambiguation using a Deep Learning Approach. BCB (2019)
Chih-Hsuan Wei, Kyubum Lee, Robert Leaman, Zhiyong Lu
Biomedical Mention Disambiguation using a Deep Learning Approach. CoRR (2019)
Qingyu Chen, Kyubum Lee, Shankai Yan, Sun Kim, Chih-Hsuan Wei, Zhiyong Lu
BioConceptVec: creating and evaluating literature-based biomedical concept embeddings on a large scale. CoRR (2019)
Kyubum Lee, Maria Livia Famiglietti, Aoife McMahon, Chih-Hsuan Wei, Jacqueline A. L. MacArthur, Sylvain Poux, Lionel Breuza, Alan Bridge, Fiona Cunningham, Ioannis Xenarios, Zhiyong Lu
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources. PLoS Comput. Biol. 14 (8) (2018)
Kyubum Lee, Byounggun Kim, Yonghwa Choi, Sunkyu Kim, Won-Ho Shin, Sunwon Lee, Sungjoon Park, Seongsoon Kim, Aik Choon Tan, Jaewoo Kang
Deep learning of mutation-gene-drug relations from the literature. BMC Bioinform. 19 (1) (2018)
Alexis Allot, Yifan Peng, Chih-Hsuan Wei, Kyubum Lee, Lon Phan, Zhiyong Lu
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Myunggyo Lee, Kyubum Lee, Namhee Yu, Insu Jang, Ikjung Choi, Pora Kim, Ye Eun Jang, Byounggun Kim, Sunkyu Kim, Byungwook Lee, Jaewoo Kang, Sanghyuk Lee
ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining. Nucleic Acids Res. 45 (Database-Issue) (2017)
Kyubum Lee, Won-Ho Shin, Byounggun Kim, Sunwon Lee, Yonghwa Choi, Sunkyu Kim, Minji Jeon, Aik Choon Tan, Jaewoo Kang
HiPub: translating PubMed and PMC texts to networks for knowledge discovery. Bioinform. 32 (18) (2016)
Kyubum Lee, Sunwon Lee, Sungjoon Park, Sunkyu Kim, Suhkyung Kim, Kwanghun Choi, Aik Choon Tan, Jaewoo Kang
BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations. Database J. Biol. Databases Curation 2016 (2016)
Jocelyn Barbosa, Kyubum Lee, Sunwon Lee, Bilal Ahmed Lodhi, Jae-Gu Cho, Woo-Keun Seo, Jaewoo Kang
Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier. BMC Medical Imaging 16 (2016)
Minjae Yoo, Jimin Shin, Jihye Kim, Karen A. Ryall, Kyubum Lee, Sunwon Lee, Minji Jeon, Jaewoo Kang, Aik Choon Tan
DSigDB: drug signatures database for gene set analysis. Bioinform. 31 (18) (2015)
Minji Jeon, Sunwon Lee, Kyubum Lee, Aik Choon Tan, Jaewoo Kang
BEReX: Biomedical Entity-Relationship eXplorer. Bioinform. 30 (1) (2014)
Junkyu Lee, Seongsoon Kim, Sunwon Lee, Kyubum Lee, Jaewoo Kang
On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach. BMC Medical Informatics Decis. Mak. 13 (S-1) (2013)
Kyubum Lee, Sunwon Lee, Minji Jeon, Jaehoon Choi, Jaewoo Kang
Drug-drug interaction analysis using heterogeneous biological information network. BIBM (2012)
Junkyu Lee, Seongsoon Kim, Sunwon Lee, Kyubum Lee, Jaewoo Kang
High precision rule based PPI extraction and per-pair basis performance evaluation. DTMBIO@CIKM (2012)
Jaehoon Choi, Donghyeon Kim, Seongsoon Kim, Sunwon Lee, Kyubum Lee, Jaewoo Kang
BOSS: context-enhanced search for biomedical objects. BMC Medical Informatics Decis. Mak. 12 (S-1) (2012)
Jihoon Choi, Kyubum Lee, Saerom Lee, Jay (Jongtae) Ihm
Channel selection for IEEE 802.11 based wireless LANs using 2.4GHz band. IEICE Electron. Express 8 (16) (2011)
Hanjun Shin, Ki Hoon Kim, Chihwan Song, Injoon Lee, Kyubum Lee, Jaewoo Kang, Yoon Kyoo Kang
Electrodiagnosis support system for localizing neural injury in an upper limb. J. Am. Medical Informatics Assoc. 17 (3) (2010)