Ling Luo

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 42

Top Topics

Dependency Trees

Annotated Corpus

Biomedical Literature

Top Venues

Database J. Biol. Databases Curation

Publications

Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge
EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR (2024)
Zeyuan Ding, Zhihao Yang, Ling Luo, Yuanyuan Sun, Hongfei Lin
From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue. AAAI (2024)
Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024)
Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR (2024)
Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation 2024 (2024)
Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo, Zhiyong Lu, Peter N. Robinson
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. Bioinform. 39 (12) (2023)
Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin
Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks. CoRR (2023)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. 39 (5) (2023)
Yuqi Liu, Zhihao Yang, Jinzhong Ning, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices. BIBM (2023)
Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu
GNorm2: an improved gene name recognition and normalization system. Bioinform. 39 (10) (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR (2023)
Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics 146 (2023)
Haixin Tan, Zhihao Yang, Zeyuan Ding, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps. BIBM (2023)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. 23 (5) (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR (2022)
Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129 (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu
A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation 2022 (2022) (2022)
Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA (2022)
Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR (2022)
Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu
Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation 2022 (2022) (2022)
Alexis Allot, Kyubum Lee, Qingyu Chen, Ling Luo, Zhiyong Lu
LitSuggest: a web-based system for literature recommendation and curation using machine learning. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37 (13) (2021)
Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
KGHC: a knowledge graph for hepatocellular carcinoma. BMC Medical Informatics Decis. Mak. (3) (2020)
Ling Luo, Zhihao Yang, Mingyu Cao, Lei Wang, Yin Zhang, Hongfei Lin
A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature. J. Biomed. Informatics 103 (2020)
Zhiheng Li, Zhihao Yang, Yang Xiang, Ling Luo, Yuanyuan Sun, Hongfei Lin
Exploiting sequence labeling framework to extract document-level relations from biomedical texts. BMC Bioinform. 21 (1) (2020)
Zhiheng Li, Zhihao Yang, Ling Luo, Yang Xiang, Hongfei Lin
Exploiting adversarial transfer learning for adverse drug reaction detection from texts. J. Biomed. Informatics 106 (2020)
Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. IEEE Access 7 (2019)
Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019 (2019)
Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang
DUTIR at TREC 2019: Precision Medicine Track. TREC (2019)
Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
KeSACNN: a protein-protein interaction article classification approach based on deep neural network. Int. J. Data Min. Bioinform. 22 (2) (2019)
Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition. Bioinform. 34 (8) (2018)
Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin
A neural network approach to chemical and gene/protein entity recognition in patents. J. Cheminformatics 10 (1) (2018)
Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM (2018)
Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang
Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach. Database J. Biol. Databases Curation 2018 (2018)
Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
A multi-task learning based approach to biomedical entity relation extraction. BIBM (2018)
Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang
HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM (2018)
Ling Luo, Nan Li, Shuaichi Li, Zhihao Yang, Hongfei Lin
DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition. CCKS Tasks (2018)
Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang
An attention-based effective neural model for drug-drug interactions extraction. BMC Bioinform. 18 (1) (2017)
Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang
Drug drug interaction extraction from biomedical literature using syntax convolutional neural network. Bioinform. 32 (22) (2016)
Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
ML-CNN: A novel deep learning based disease named entity recognition architecture. BIBM (2016)
Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao
Deep neural network based protein-protein interaction extraction from biomedical literature. BIBM (2015)