Yin Zhang

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 32

Top Topics

Biomedical Literature

Protein Interaction

Top Venues

J. Biomed. Informatics

Publications

Yingwen Zhao, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Predicting Protein Functions Based on Heterogeneous Graph Attention Technique. IEEE J. Biomed. Health Informatics 28 (4) (2024)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework. J. Biomed. Informatics 125 (2022)
Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins. BIBM (2022)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Biomedical named entity recognition using BERT in the machine reading comprehension framework. J. Biomed. Informatics 118 (2021)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Deep learning with language models improves named entity recognition for PharmaCoNER. BMC Bioinform. 22 (1) (2021)
Zhiheng Li, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Lexicon Knowledge Boosted Interaction Graph Network for Adverse Drug Reaction Recognition From Social Media. IEEE J. Biomed. Health Informatics 25 (7) (2021)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Biomedical named entity recognition using BERT in the machine reading comprehension framework. CoRR (2020)
Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
KGHC: a knowledge graph for hepatocellular carcinoma. BMC Medical Informatics Decis. Mak. (3) (2020)
Ling Luo, Zhihao Yang, Mingyu Cao, Lei Wang, Yin Zhang, Hongfei Lin
A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature. J. Biomed. Informatics 103 (2020)
Yuan Xu, Zhihao Yang, Yawen Song, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature. BIBM (2020)
Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge. Bioinform. 36 (15) (2020)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Attention guided capsule networks for chemical-protein interaction extraction. J. Biomed. Informatics 103 (2020)
Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. IEEE Access 7 (2019)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method. Int. J. Data Min. Bioinform. 22 (2) (2019)
Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge. CoRR (2019)
Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
KeSACNN: a protein-protein interaction article classification approach based on deep neural network. Int. J. Data Min. Bioinform. 22 (2) (2019)
Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition. Bioinform. 34 (8) (2018)
Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin
A neural network approach to chemical and gene/protein entity recognition in patents. J. Cheminformatics 10 (1) (2018)
Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery. BIBM (2018)
Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang
PC-SENE: A node embedding based method for protein complex detection. BIBM (2018)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature. BIBM (2018)
Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM (2018)
Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
A multi-task learning based approach to biomedical entity relation extraction. BIBM (2018)
Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang
HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM (2018)
Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Bo Xu
Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks. BMC Bioinform. 19 (1) (2018)
Zhen Tian, Maozu Guo, Chunyu Wang, Linlin Xing, Lei Wang, Yin Zhang
Constructing an integrated gene similarity network for the identification of disease genes. J. Biomed. Semant. (1) (2017)
Kai Che, Xiaoyan Liu, Maozu Guo, Junwei Zhang, Lei Wang, Yin Zhang
Epistasis detection using a permutation-based Gradient Boosting Machine. BIBM (2016)
Linlin Xing, Maozu Guo, Xiaoyan Liu, Chun-yu Wang, Lei Wang, Yin Zhang
Reconstructing gene regulatory network based on candidate auto selection method. BIBM (2016)
Zhen Tian, Maozu Guo, Chunyu Wang, Linlin Xing, Lei Wang, Yin Zhang
Constructing an integrated gene similarity network for the identification of disease genes. BIBM (2016)
Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
ML-CNN: A novel deep learning based disease named entity recognition architecture. BIBM (2016)
Ziwei Zhou, Yingyi Gui, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
Disease-specific protein complex detection in the human protein interaction network with a supervised learning method. BIBM (2016)
Zhiheng Li, Zhihao Yang, Hongfei Lin, Jian Wang, Yingyi Gui, Yin Zhang, Lei Wang
CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature. BIBM (2016)