Yijia Zhang

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 46

Top Topics

Biomedical Literature

Protein Interaction

Top Venues

J. Biomed. Informatics

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Zhichao Ping, Guoming Sang, Zhi Liu, Yijia Zhang
Aspect category sentiment analysis based on prompt-based learning with attention mechanism. Neurocomputing 565 (2024)
Yuanxin Liu, Guoming Sang, Zhi Liu, Yilin Pan, Junkai Cheng, Yijia Zhang
MPTN: A message-passing transformer network for drug repurposing from knowledge graph. Comput. Biol. Medicine 168 (2024)
Sichen Jin, Yijia Zhang, Xingwang Li, Mingyu Lu
Heterogeneous Graph Convolutional Network for E-Commerce Product Recommendation With Adaptive Denoising Training. IEEE Trans. Consumer Electron. 70 (1) (2024)
Sichen Jin, Yijia Zhang, Huimin Yu, Mingyu Lu
SADR: Self-Supervised Graph Learning With Adaptive Denoising for Drug Repositioning. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (2) (2024)
Xiaoying Zhou, Yijia Zhang, Zhuang Wang, Mingyu Lu, Xiaoxia Liu
MAFN: multi-level attention fusion network for multimodal named entity recognition. Multim. Tools Appl. 83 (15) (2024)
Hui Ma, Jian Wang, Hongfei Lin, Bo Zhang, Yijia Zhang, Bo Xu
A Transformer-Based Model With Self-Distillation for Multimodal Emotion Recognition in Conversations. CoRR (2023)
Yaohua Pan, Yijia Zhang, Jing Zhang, Mingyu Lu
CSDTI: an interpretable cross-attention network with GNN-based drug molecule aggregation for drug-target interaction prediction. Appl. Intell. 53 (22) (2023)
Yumeng Yang, Hongfei Lin, Zhihao Yang, Yijia Zhang, Di Zhao, Shuaiheng Huai
ADPG: Biomedical entity recognition based on Automatic Dependency Parsing Graph. J. Biomed. Informatics 140 (2023)
Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang
Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Yi Sun, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang
Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Xiaodi Hou, Zhi Liu, Xiaobo Li, Xingwang Li, Shengtian Sang, Yijia Zhang
MKCL: Medical Knowledge with Contrastive Learning model for radiology report generation. J. Biomed. Informatics 146 (2023)
Zeqian Li, Yijia Zhang, Huimin Yu, Chunling Wang
Multi-Perspective Semantic Enhanced Model for Heterogeneous Graph Embedding with Contrastive Learning. FAIML (2023)
Peixuan Zhou, Yijia Zhang, Fei Chen, Mingyu Lu, Wen Qu, Hongfei Lin, Xiaoxia Liu
Contrastive Self-Supervised Representation Learning for Protein Complexes Identification. BIBM (2022)
Ming Yang, Yijia Zhang, Santosh Kumar Banbhrani, Hongfei Lin, Mingyu Lu
Document-Level Relation Extraction with a Dependency Syntax Transformer and Supervised Contrastive Learning. CCKS (2022)
Hui Ma, Jian Wang, Hongfei Lin, Xuejun Pan, Yijia Zhang, Zhihao Yang
A multi-view network for real-time emotion recognition in conversations. Knowl. Based Syst. 236 (2022)
Xinrui Dong, Yijia Zhang, Kuo Pang, Fei Chen, Mingyu Lu
Heterogeneous graph neural networks with denoising for graph embeddings. Knowl. Based Syst. 238 (2022)
Mengyuan Qian, Jian Wang, Hongfei Lin, Di Zhao, Yijia Zhang, Wentai Tang, Zhihao Yang
Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction. CCIR (2021)
Yu Wang, Shaowu Zhang, Yijia Zhang, Liang Yang, Hongfei Lin
A Drug Repositioning Method Based on Heterogeneous Graph Neural Network. CCIR (2021)
Di Zhao, Jian Wang, Yonghe Chu, Yijia Zhang, Zhihao Yang, Hongfei Lin
Improving biomedical word representation with locally linear embedding. Neurocomputing 447 (2021)
Di Zhao, Jian Wang, Hongfei Lin, Xin Wang, Zhihao Yang, Yijia Zhang
Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks. Appl. Soft Comput. 104 (2021)
Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang, Di Zhao, Hui Ma
Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition. BIBM (2021)
Yu Wang, Shaowu Zhang, Yijia Zhang, Jian Wang, Hongfei Lin
Extracting Protein-Protein Interactions Affected by Mutations via Auxiliary Task and Domain Pre-trained Model. BIBM (2020)
Bin Wu, Yijia Zhang, Yuxin Wang
Hyperbolic Attributed Network Embedding with self-adaptive Random Walks. CIIS (2020)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method. Int. J. Data Min. Bioinform. 22 (2) (2019)
Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Liang Yang, Bo Xu, Zhihao Yang, Jian Wang, Yijia Zhang
Adverse drug reaction detection via a multihop self-attention mechanism. BMC Bioinform. 20 (1) (2019)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun
Chemical-protein interaction extraction via contextualized word representations and multihead attention. Database J. Biol. Databases Curation 2019 (2019)
Di Zhao, Jian Wang, Hongfei Lin, Zhihao Yang, Yijia Zhang
Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network. J. Biomed. Informatics 99 (2019)
Yijia Zhang, Zhiyong Lu
Exploring Semi-supervised Variational Autoencoders for Biomedical Relation Extraction. CoRR (2019)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun, Bo Xu, Zhehuan Zhao
Neural network-based approaches for biomedical relation classification: A review. J. Biomed. Informatics 99 (2019)
Bo Xu, Kun Li, Wei Zheng, Xiaoxia Liu, Yijia Zhang, Zhehuan Zhao, Zengyou He
Protein complexes identification based on go attributed network embedding. BMC Bioinform. 19 (1) (2018)
Bo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia
Protein Complexes Detection Based on Global Network Representation Learning. BIBM (2018)
Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery. BIBM (2018)
Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang
PC-SENE: A node embedding based method for protein complex detection. BIBM (2018)
Zhizheng Wang, Yuanyuan Sun, Yawen Guan, Yibin Zhang, Liang Yang, Kan Xu, Yijia Zhang, Hongfei Lin
A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation. BIBM (2018)
Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature. BIBM (2018)
Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM (2018)
Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
A multi-task learning based approach to biomedical entity relation extraction. BIBM (2018)
Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang
HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM (2018)
Wei Zheng, Hongfei Lin, Zhiheng Li, Xiaoxia Liu, Zhengguang Li, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang
An effective neural model extracting document level chemical-induced disease relations from biomedical literature. J. Biomed. Informatics 83 (2018)
Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier
Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. 34 (5) (2018)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Shaowu Zhang, Yuanyuan Sun, Liang Yang
A hybrid model based on neural networks for biomedical relation extraction. J. Biomed. Informatics 81 (2018)
Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin
Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion. BIBM (2018)
Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang
An attention-based effective neural model for drug-drug interactions extraction. BMC Bioinform. 18 (1) (2017)
Wei Zheng, Hongfei Lin, Zhehuan Zhao, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang
A graph kernel based on context vectors for extracting drug-drug interactions. J. Biomed. Informatics 61 (2016)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
Construction of dynamic probabilistic protein interaction networks for protein complex identification. BMC Bioinform. 17 (2016)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang
A method for predicting protein complex in dynamic PPI networks. BMC Bioinform. 17 (S-7) (2016)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
Integrating experimental and literature protein-protein interaction data for protein complex prediction. BMC Genom. 16 (S-2) (2015)
Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun
Biomedical event trigger detection by dependency-based word embedding. BIBM (2015)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Bo Xu
Integrating multiple biomedical resources for protein complex prediction. BIBM (2013)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li, Bo Xu
Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (3) (2013)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang
Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity. BIBM (2011)
Yijia Zhang, Hongfei Lin, Zhihao Yang, Yanpeng Li
Neighborhood hash graph kernel for protein-protein interaction extraction. J. Biomed. Informatics 44 (6) (2011)