Michel Dumontier

ORCID

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 119

Top Venues

CoRR

J. Biomed. Semant.

SWAT4LS

J. Biomed. Informatics

Publications

Sabrina Kirrane, Oshani Seneviratne, Michel Dumontier
Editorial of the special issue on semantic technologies for data and algorithmic governance. Semantic Web 15 (3) (2024)
N'Dah Jean Kouagou, Arif Yilmaz, Michel Dumontier, Axel-Cyrille Ngonga Ngomo
Improving rule mining via embedding-based link prediction. CoRR (2024)
Amrapali Zaveri, Pedro V. Hernandez Serrano, Michel Dumontier
CrowdED 1.0: Statistical Guideline for Designing Optimal Crowdsourcing Experiments. Hum. Comput. 11 (1) (2024)
Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. CoRR (2024)
Mahmoud Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gokhan Ertaylan, Michel Dumontier
Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. CoRR (2024)
Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier
Audio-Language Datasets of Scenes and Events: A Survey. CoRR (2024)
Claus Stadler, Muhammad Saleem, Qaiser Mehmood, Carlos Buil Aranda, Michel Dumontier, Aidan Hogan, Axel-Cyrille Ngonga Ngomo
LSQ 2.0: A linked dataset of SPARQL query logs. Semantic Web 15 (1) (2024)
Michel Dumontier
Towards Biomedical Neurosymbolic AI: From Knowledge Infrastructure to Explainable Predictions. SeWeBMeDA@ESWC (2024)
Chang Sun, Johan van Soest, Michel Dumontier
Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. SWAT4HCLS (2023)
Onaopepo Adekunle, Arno Riedl, Michel Dumontier
Models towards Risk Behavior Prediction and Analysis: A Netherlands Case study. CoRR (2023)
Chang Sun, Marc Gallofré Ocaña, Johan van Soest, Michel Dumontier
ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research. Semantic Web 14 (5) (2023)
Chang Sun, Johan van Soest, Michel Dumontier
Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy. J. Biomed. Informatics 143 (2023)
Michele Esposito, Giancarlo Valente, Yenisel Plasencia Calaña, Michel Dumontier, Bruno L. Giordano, Elia Formisano
Semantically-Informed Deep Neural Networks For Sound Recognition. ICASSP (2023)
Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. EUSIPCO (2023)
Weiwei Wang, Stefano Bromuri, Michel Dumontier
Graph-based Categorical Embedding. ESANN (2023)
Franz Krause, Xi Yan, Baptiste Darnala, Michel Dumontier
On the Combination of Event Calculus and Empirical Semantic Drifts. ESWC Workshops (2023)
Onaopepo Adekunle, Arno Riedl, Michel Dumontier
Evidence From Data Science on the Relationship Between Individual Beliefs/Behaviors Survey During COVID-19 Pandemic and Risk Preference. Adv. Artif. Intell. Mach. Learn. 3 (4) (2023)
Elif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier
Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. SWAT4HCLS (2023)
Carlos Utrilla Guerrero, Maria Vivas Romero, Marc Dolman, Michel Dumontier
FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights. CoRR (2023)
Julie Loesch, Michel Dumontier, Remzi Celebi
Enhanced GAT: Expanding Receptive Field with Meta Path-Guided RDF Rules for Two-Hop Connectivity. QALD/SemREC@ISWC (2023)
Visara Urovi, Remzi Celebi, Chang Sun, Linda Rieswijk, Michael Erard, Arif Yilmaz, Kody Moodley, Parveen Kumar, Michel Dumontier
TAPS Responsibility Matrix: A tool for responsible data science by design. CoRR (2023)
Visara Urovi, Vikas Jaiman, Arno Angerer, Michel Dumontier
LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance. CoRR (2022)
Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier, Remzi Celebi
Automated Identification of Food Substitutions Using Knowledge Graph Embeddings. SWAT4HCLS (2022)
Chang Sun, Vincent Emonet, Michel Dumontier
A Comprehensive Comparison of Automated FAIRness Evaluation Tools. SWAT4HCLS (2022)
Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne T. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall
Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. CoRR (2022)
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13 (1) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50 (W1) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR (2022)
Michel Dumontier
A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161. Data Sci. 5 (1) (2022)
Weiwei Wang, Yuchen Han, Stefano Bromuri, Michel Dumontier
Semantic Correlation Graph Embedding. FUZZ-IEEE (2022)
Olga L. Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier, Tobias Kuhn
Nanotate: Semantically Annotating Experimental Protocols with Nanopublications. SWAT4HCLS (2022)
Chang Sun, Johan van Soest, Annemarie Koster, Simone J. P. M. Eussen, Miranda T. Schram, Coen D. A. Stehouwer, Pieter C. Dagnelie, Michel Dumontier
Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure. J. Biomed. Informatics 134 (2022)
Chang Sun, Johan van Soest, Michel Dumontier
Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs. CoRR (2022)
Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn
User-friendly Composition of FAIR Workflows in a Notebook Environment. K-CAP (2021)
Krist Shingjergji, Remzi Celebi, Jan C. Scholtes, Michel Dumontier
Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines. J. Biomed. Informatics 122 (2021)
Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos
Reuse of Design Pattern Measurements for Health Data. JOWO (2021)
Andreea Grigoriu, Amrapali Zaveri, Gerhard Weiss, Michel Dumontier
SIENA: Semi-automatic semantic enhancement of datasets using concept recognition. J. Biomed. Semant. 12 (1) (2021)
Stuti Nayak, Amrapali Zaveri, Pedro Hernandez Serrano, Michel Dumontier
Experience: Automated Prediction of Experimental Metadata from Scientific Publications. ACM J. Data Inf. Qual. 13 (4) (2021)
Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest
A systematic review on privacy-preserving distributed data mining. Data Sci. 4 (2) (2021)
Kody Moodley, Linda Rieswijk, Tudor I. Oprea, Michel Dumontier
InContext: curation of medical context for drug indications. J. Biomed. Semant. 12 (1) (2021)
Fadila Zerka, Visara Urovi, Fabio Bottari, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Martin Gueuning, Akshayaa Vaidyanathan, Wim Vos, Mariaelena Occhipinti, Henry C. Woodruff, Michel Dumontier, Philippe Lambin
Privacy preserving distributed learning classifiers - Sequential learning with small sets of data. Comput. Biol. Medicine 136 (2021)
Subhi Issa, Onaopepo Adekunle, Fayçal Hamdi, Samira Si-Said Cherfi, Michel Dumontier, Amrapali Zaveri
Knowledge Graph Completeness: A Systematic Literature Review. IEEE Access 9 (2021)
Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn
User-friendly Composition of FAIR Workflows in a Notebook Environment. CoRR (2021)
Tobias Kuhn, Ruben Taelman, Vincent Emonet, Haris Antonatos, Stian Soiland-Reyes, Michel Dumontier
Semantic micro-contributions with decentralized nanopublication services. PeerJ Comput. Sci. 7 (2021)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2 (1-2) (2020)
Ricardo de Miranda Azevedo, Michel Dumontier
Considerations for the Conduction and Interpretation of FAIRness Evaluations. Data Intell. 2 (1-2) (2020)
Nacira Abbas, Kholoud Alghamdi, Mortaza Alinam, Francesca Alloatti, Glenda C. M. Amaral, Claudia d'Amato, Luigi Asprino, Martin Beno, Felix Bensmann, Russa Biswas, Ling Cai, Riley Capshaw, Valentina Anita Carriero, Irene Celino, Amine Dadoun, Stefano De Giorgis, Harm Delva, John Domingue, Michel Dumontier, Vincent Emonet, Marieke van Erp, Paola Espinoza-Arias, Omaima Fallatah, Sebastián Ferrada, Marc Gallofré Ocaña, Michalis Georgiou, Genet Asefa Gesese, Frances Gillis-Webber, Francesca Giovannetti, María Granados Buey, Ismail Harrando, Ivan Heibi, Vitor Horta, Laurine Huber, Federico Igne, Mohamad Yaser Jaradeh, Neha Keshan, Aneta Koleva, Bilal Koteich, Kabul Kurniawan, Mengya Liu, Chuangtao Ma, Lientje Maas, Martin Mansfield, Fabio Mariani, Eleonora Marzi, Sepideh Mesbah, Maheshkumar Mistry, Alba Catalina Morales Tirado, Anna Nguyen, Viet Bach Nguyen, Allard Oelen, Valentina Pasqual, Heiko Paulheim, Axel Polleres, Margherita Porena, Jan Portisch, Valentina Presutti, Kader Pustu-Iren, Ariam Rivas Mendez, Soheil Roshankish, Sebastian Rudolph, Harald Sack, Ahmad Sakor, Jaime Salas, Thomas Schleider, Meilin Shi, Gianmarco Spinaci, Chang Sun, Tabea Tietz, Molka Tounsi Dhouib, Alessandro Umbrico, Wouter van den Berg, Weiqin Xu
Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. CoRR (2020)
Fadila Zerka, Visara Urovi, Akshayaa Vaidyanathan, Samir Barakat, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Benjamin Miraglio, Henry C. Woodruff, Michel Dumontier, Philippe Lambin
Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM). IEEE Access 8 (2020)
Pedro V. Hernandez Serrano, Kody Moodley, Gijs van Dijck, Michel Dumontier
Sleeping Beauties in Case Law. JURIX (2020)
Paul Groth, Michel Dumontier
Introduction - FAIR data, systems and analysis. Data Sci. 3 (1) (2020)
Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2 (1-2) (2020)
Michel Dumontier
Accelerating Discovery Science with an Internet of FAIR Data and Services. CIKM (2020)
Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
Towards FAIR protocols and workflows: the OpenPREDICT use case. PeerJ Comput. Sci. 6 (2020)
Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi
Ten simple rules for making training materials FAIR. PLoS Comput. Biol. 16 (5) (2020)
Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier
GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. IEEE Access 7 (2019)
Tiffany I. Leung, Sima Pendharkar, Chwen-Yuen Angie Chen, Michel Dumontier
Finding the evidence base using citation networks: Do 300 to 400 U.S. physicians die by suicide annually? AMIA (2019)
Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo (2019)
Erik-Jan van Kesteren, Chang Sun, Daniel L. Oberski, Michel Dumontier, Lianne Ippel
Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent. CoRR (2019)
Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier
Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS (2019)
Tiffany I. Leung, Michel Dumontier
FAIR Principles for Clinical Practice Guidelines in a Learning Health System. MedInfo (2019)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Amrapali Zaveri, Wei Hu, Michel Dumontier
MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment. Hum. Comput. 6 (2019)
Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker
Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS (2019)
Nadine Havelange, Michel Dumontier, Birgit Wouters, Jona Linde, David Townend, Arno Riedl, Visara Urovi
LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE. CoRR (2019)
Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
Towards FAIR protocols and workflows: The OpenPREDICT case study. CoRR (2019)
Jamie P. McCusker, Michel Dumontier, Shruthi Chari, Joanne S. Luciano, Deborah L. McGuinness
A Linked Data Representation for Summary Statistics and Grouping Criteria. SAWSemStats@ISWC (2019)
Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. JT@ISWC (2019)
Kody Moodley, Pedro V. Hernandez Serrano, Gijs van Dijck, Michel Dumontier
Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases. JURIX (2019)
Remzi Celebi, Hüseyin Uyar, Erkan Yasar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. BMC Bioinform. 20 (1) (2019)
Remzi Çelebi, Erkan Yasar, Hüseyin Uyar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data. SWAT4LS (2018)
Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS (2018)
Amrapali Zaveri, Pedro Hernandez Serrano, Manisha Desai, Michel Dumontier
CrowdED: Guideline for Optimal Crowdsourcing Experimental Design. WWW (Companion Volume) (2018)
Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier
Analyzing Partitioned FAIR Health Data Responsibly. CoRR (2018)
Ruben Verborgh, Michel Dumontier
A Web API Ecosystem through Feature-Based Reuse. IEEE Internet Comput. 22 (3) (2018)
Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR (2018)
Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE (2018)
Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience (2018)
Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier
Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. 34 (5) (2018)
Kody Moodley, Amrapali Zaveri, Chunlei Wu, Michel Dumontier
A model for capturing provenance of assertions about chemical substances. SWAT4LS (2018)
Vincent Emonet, Amrapali Zaveri, Alexander Malic, Andreea Grigoriu, Michel Dumontier
Data2Services: enabling automated conversion of data to services. SWAT4LS (2018)
Mor Peleg, Tiffany I. Leung, Manisha Desai, Michel Dumontier
Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain. AIME (2017)
Wei Hu, Honglei Qiu, JiaCheng Huang, Michel Dumontier
BioSearch: a semantic search engine for Bio2RDF. Database J. Biol. Databases Curation 2017 (2017)
Wei Hu, Amrapali Zaveri, Honglei Qiu, Michel Dumontier
Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. BMC Bioinform. 18 (1) (2017)
Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics 71 (2017)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 5 (2017)
Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen M. Jagodnik, Pedro Assis, Michel Dumontier
smartAPI: Towards a More Intelligent Network of Web APIs. ESWC (2) (2017)
Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness
Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Comput. Sci. 3 (2017)
Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8 (1) (2017)
Adeeb Noor, Abdullah Assiri, Serkan Ayvaz, Connor Clark, Michel Dumontier
Drug-drug interaction discovery and demystification using Semantic Web technologies. J. Am. Medical Informatics Assoc. 24 (3) (2017)
Maryam Panahiazar, Michel Dumontier, Olivier Gevaert
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). J. Biomed. Informatics 72 (2017)
Remzi Çelebi, Özgün Erten, Michel Dumontier
Machine Learning Based Drug Indication Prediction Using Linked Open Data. SWAT4LS (2017)
Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan
Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. 8 (1) (2017)
Michel Dumontier, Tobias Kuhn
Data Science - Methods, infrastructure, and applications. Data Sci. 1 (1-2) (2017)
Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community
Bioschemas: schema.org for the Life Sciences. SWAT4LS (2017)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. 3 (2017)
Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use 37 (1) (2017)
Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) (2017)
Stuart J. Nelson, Tudor I. Oprea, Oleg Ursu, Cristian Bologa, Amrapali Zaveri, Jayme Holmes, Jeremy J. Yang, Stephen L. Mathias, Subramani Mani, Mark S. Tuttle, Michel Dumontier
Formalizing drug indications on the road to therapeutic intent. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Tobias Kuhn, Michel Dumontier
Genuine semantic publishing. Data Sci. 1 (1-2) (2017)

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Michel Dumontier