Jeremy J. Yang

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 18

Top Topics

Learning Platform

Pharmaceutical Industry

Top Venues

Nucleic Acids Res.

J. Biomed. Semant.

Publications

Sorin I. Avram, Thomas B. Wilson, Ramona Curpan, Liliana Halip, Ana Borota, Alina Bora, Cristian Bologa, Jayme Holmes, Jeffrey Knockel, Jeremy J. Yang, Tudor I. Oprea
DrugCentral 2023 extends human clinical data and integrates veterinary drugs. Nucleic Acids Res. 51 (D1) (2023)
Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51 (D1) (2023)
Qi Yu, Qi Wang, Yafei Zhang, Chongyan Chen, Hyeyoung Ryu, Namu Park, Jae-Eun Baek, Keyuan Li, Yifei Wu, Daifeng Li, Jian Xu, Meijun Liu, Jeremy J. Yang, Chenwei Zhang, Chao Lu, Peng Zhang, Xin Li, Baitong Chen, Islam Akef Ebeid, Julia Fensel, Chao Min, Yujia Zhai, Min Song, Ying Ding, Yi Bu
Reply to issues about entitymetrics and paper-entity citation network. Scientometrics 127 (4) (2022)
Jeremy J. Yang, Christopher Gessner, Joel Duerksen, Daniel Biber, Jessica L. Binder, Murat Ozturk, Brian Foote, Robin McEntire, Kyle Stirling, Ying Ding, David J. Wild
Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination. BMC Bioinform. 23 (1) (2022)
Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jeremy J. Yang, Dhouha Grissa, Christophe G. Lambert, Cristian Bologa, Stephen L. Mathias, Anna Waller, David J. Wild, Lars Juhl Jensen, Tudor I. Oprea
TIGA: target illumination GWAS analytics. Bioinform. 37 (21) (2021)
Govinda B. Kc, Giovanni Bocci, Srijan Verma, Md Mahmudulla Hassan, Jayme Holmes, Jeremy J. Yang, Suman Sirimulla, Tudor I. Oprea
A machine learning platform to estimate anti-SARS-CoV-2 activities. Nat. Mach. Intell. 3 (6) (2021)
Qi Yu, Qi Wang, Yafei Zhang, Chongyan Chen, Hyeyoung Ryu, Namu Park, Jae-Eun Baek, Keyuan Li, Yifei Wu, Daifeng Li, Jian Xu, Meijun Liu, Jeremy J. Yang, Chenwei Zhang, Chao Lu, Peng Zhang, Xin Li, Baitong Chen, Islam Akef Ebeid, Julia Fensel, Chao Min, Yujia Zhai, Min Song, Ying Ding, Yi Bu
Analyzing knowledge entities about COVID-19 using entitymetrics. Scientometrics 126 (5) (2021)
Sorin I. Avram, Cristian Bologa, Jayme Holmes, Giovanni Bocci, Thomas B. Wilson, Dac-Trung Nguyen, Ramona Curpan, Liliana Halip, Alina Bora, Jeremy J. Yang, Jeffrey Knockel, Suman Sirimulla, Oleg Ursu, Tudor I. Oprea
DrugCentral 2021 supports drug discovery and repositioning. Nucleic Acids Res. 49 (Database-Issue) (2021)
Zheng Gao, Gang Fu, Chunping Ouyang, Satoshi Tsutsui, Xiaozhong Liu, Jeremy J. Yang, Christopher Gessner, Brian Foote, David J. Wild, Ying Ding, Qi Yu
edge2vec: Representation learning using edge semantics for biomedical knowledge discovery. BMC Bioinform. 20 (1) (2019)
Oleg Ursu, Jayme Holmes, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Vasileios Stathias, Dac-Trung Nguyen, Stephan C. Schürer, Tudor I. Oprea
DrugCentral 2018: an update. Nucleic Acids Res. 47 (Database-Issue) (2019)
Yu Lin, Saurabh Mehta, Hande Küçük-McGinty, John Paul Turner, Dusica Vidovic, Michele Forlin, Amar Koleti, Dac-Trung Nguyen, Lars Juhl Jensen, Rajarshi Guha, Stephen L. Mathias, Oleg Ursu, Vasileios Stathias, Jianbin Duan, Nooshin Nabizadeh, Caty Chung, Christopher Mader, Ubbo Visser, Jeremy J. Yang, Cristian Bologa, Tudor I. Oprea, Stephan C. Schürer
Drug target ontology to classify and integrate drug discovery data. J. Biomed. Semant. 8 (1) (2017)
Daniel Cannon, Jeremy J. Yang, Stephen L. Mathias, Oleg Ursu, Subramani Mani, Anna Waller, Stephan C. Schürer, Lars Juhl Jensen, Larry A. Sklar, Cristian Bologa, Tudor I. Oprea
TIN-X: target importance and novelty explorer. Bioinform. 33 (16) (2017)
Oleg Ursu, Jayme Holmes, Jeffrey Knockel, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Stuart J. Nelson, Tudor I. Oprea
DrugCentral: online drug compendium. Nucleic Acids Res. 45 (Database-Issue) (2017)
Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45 (Database-Issue) (2017)
Stuart J. Nelson, Tudor I. Oprea, Oleg Ursu, Cristian Bologa, Amrapali Zaveri, Jayme Holmes, Jeremy J. Yang, Stephen L. Mathias, Subramani Mani, Mark S. Tuttle, Michel Dumontier
Formalizing drug indications on the road to therapeutic intent. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Marija Djokic-Petrovic, Vladimir M. Cvjetkovic, Jeremy J. Yang, Marko Zivanovic, David J. Wild
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets. J. Biomed. Semant. 8 (1) (2017)
Jeremy J. Yang, Oleg Ursu, Christopher A. Lipinski, Larry A. Sklar, Tudor I. Oprea, Cristian Bologa
Badapple: promiscuity patterns from noisy evidence. J. Cheminformatics 8 (1) (2016)
Stephen L. Mathias, Jarrett Hines-Kay, Jeremy J. Yang, Gergely Zahoránszky-Köhalmi, Cristian Bologa, Oleg Ursu, Tudor I. Oprea
The CARLSBAD Database: A Confederated Database of Chemical Bioactivities. Database J. Biol. Databases Curation 2013 (2013)