Lars Juhl Jensen

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 38

Top Topics

Subcellular Localization

Protein Functional

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

PLoS Comput. Biol.

Publications

Mikaela Koutrouli, Katerina C. Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinform. 40 (2) (2024)
Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, Katerina C. Nastou, Farrokh Mehryary, Radja Hachilif, Annika L. Gable, Tao Fang, Nadezhda T. Doncheva, Sampo Pyysalo, Peer Bork, Lars Juhl Jensen, Christian von Mering
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res. 51 (D1) (2023)
Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P. Cantalapiedra, Joaquín Giner-Lamia, Daniel R. Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Jaime Huerta-Cepas
eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Res. 51 (D1) (2023)
Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51 (D1) (2023)
Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. J. Chem. Inf. Model. 62 (3) (2022)
Marie Locard-Paulet, Oana Palasca, Lars Juhl Jensen
Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies. PLoS Comput. Biol. 18 (10) (2022)
Dhouha Grissa, Alexander Junge, Tudor I. Oprea, Lars Juhl Jensen
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration. Database J. Biol. Databases Curation 2022 (2022) (2022)
Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49 (Database-Issue) (2021)
Damian Szklarczyk, Annika L. Gable, Katerina C. Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T. Doncheva, Marc Legeay, Tao Fang, Peer Bork, Lars Juhl Jensen, Christian von Mering
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jeremy J. Yang, Dhouha Grissa, Christophe G. Lambert, Cristian Bologa, Stephen L. Mathias, Anna Waller, David J. Wild, Lars Juhl Jensen, Tudor I. Oprea
TIGA: target illumination GWAS analytics. Bioinform. 37 (21) (2021)
Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen
Using National Electronic Health Care Registries to Analyse and Predict Alcoholic Liver Disease. EGC (2020)
Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen
Alcoholic liver disease: A registry view on comorbidities and disease prediction. PLoS Comput. Biol. 16 (9) (2020)
Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen
Visualize omics data on networks with Omics Visualizer, a Cytoscape App. F1000Research 9 (2020)
Alexander Junge, Lars Juhl Jensen
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. Bioinform. 36 (1) (2020)
Sune Pletscher-Frankild, Lars Juhl Jensen
Design, implementation, and operation of a rapid, robust named entity recognition web service. J. Cheminformatics 11 (1) (2019)
Somnath Tagore, Alessandro Gorohovski, Lars Juhl Jensen, Milana Frenkel-Morgenstern
ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins. PLoS Comput. Biol. 15 (8) (2019)
Damian Szklarczyk, Annika L. Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T. Doncheva, John H. Morris, Peer Bork, Lars Juhl Jensen, Christian von Mering
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47 (Database-Issue) (2019)
Xiaoyong Pan, Lars Juhl Jensen, Jan Gorodkin
Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles. Bioinform. 35 (9) (2019)
Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K. Forslund, Helen Cook, Daniel R. Mende, Ivica Letunic, Thomas Rattei, Lars Juhl Jensen, Christian von Mering, Peer Bork
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 47 (Database-Issue) (2019)
David Westergaard, Hans Henrik Stærfeldt, Christian Tønsberg, Lars Juhl Jensen, Søren Brunak
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PLoS Comput. Biol. 14 (2) (2018)
Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen
TISSUES 2.0: an integrative web resource on mammalian tissue expression. Database J. Biol. Databases Curation 2018 (2018)
Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost
LocText: relation extraction of protein localizations to assist database curation. BMC Bioinform. 19 (1) (2018)
Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen
TISSUES 2.0: an integrative web resource on mammalian tissue expression. Database J. Biol. Databases Curation 2018 (2018)
Francesco Russo, Sebastiano Di Bella, Federica Vannini, Gabriele Berti, Flavia Scoyni, Helen Cook, Alberto Santos, Giovanni Nigita, Vincenzo Bonnici, Alessandro Laganà, Filippo Geraci, Alfredo Pulvirenti, Rosalba Giugno, Federico De Masi, Kirstine Belling, Lars Juhl Jensen, Søren Brunak, Marco Pellegrini, Alfredo Ferro
miRandola 2017: a curated knowledge base of non-invasive biomarkers. Nucleic Acids Res. 46 (Database-Issue) (2018)
Yu Lin, Saurabh Mehta, Hande Küçük-McGinty, John Paul Turner, Dusica Vidovic, Michele Forlin, Amar Koleti, Dac-Trung Nguyen, Lars Juhl Jensen, Rajarshi Guha, Stephen L. Mathias, Oleg Ursu, Vasileios Stathias, Jianbin Duan, Nooshin Nabizadeh, Caty Chung, Christopher Mader, Ubbo Visser, Jeremy J. Yang, Cristian Bologa, Tudor I. Oprea, Stephan C. Schürer
Drug target ontology to classify and integrate drug discovery data. J. Biomed. Semant. 8 (1) (2017)
Helen Cook, Rudolfs Berzins, Cristina Leal Rodriguez, Juan Miguel Cejuela, Lars Juhl Jensen
Creation and evaluation of a dictionary-based tagger for virus species and proteins. BioNLP (2017)
Daniel Cannon, Jeremy J. Yang, Stephen L. Mathias, Oleg Ursu, Subramani Mani, Anna Waller, Stephan C. Schürer, Lars Juhl Jensen, Larry A. Sklar, Cristian Bologa, Tudor I. Oprea
TIN-X: target importance and novelty explorer. Bioinform. 33 (16) (2017)
Damian Szklarczyk, John H. Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T. Doncheva, Alexander Roth, Peer Bork, Lars Juhl Jensen, Christian von Mering
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 45 (Database-Issue) (2017)
Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45 (Database-Issue) (2017)
Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin
RAIN: RNA-protein Association and Interaction Networks. Database J. Biol. Databases Curation 2017 (2017)
Evangelos Pafilis, Pier Luigi Buttigieg, Barbra Ferrell, Emiliano Pereira, Julia Schnetzer, Christos Arvanitidis, Lars Juhl Jensen
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. Database J. Biol. Databases Curation 2016 (2016)
Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork
The SIDER database of drugs and side effects. Nucleic Acids Res. 44 (Database-Issue) (2016)
Andrea Franceschini, Jianyi Lin, Christian von Mering, Lars Juhl Jensen
SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. Bioinform. 32 (7) (2016)
Damian Szklarczyk, Alberto Santos, Christian von Mering, Lars Juhl Jensen, Peer Bork, Michael Kuhn
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. Nucleic Acids Res. 44 (Database-Issue) (2016)
Lars Juhl Jensen
One Tagger, Many Uses: Illustrating the Power of Ontologies in Dictionary-based Named Entity Recognition. ICBO/BioCreative (2016)
Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44 (Database-Issue) (2016)
Helen Cook, Evangelos Pafilis, Lars Juhl Jensen
A dictionary- and rule-based system for identification of bacteria and habitats in text. BioNLP (Shared Task) (2016)
Alberto Santos, Rasmus Wernersson, Lars Juhl Jensen
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. Nucleic Acids Res. 43 (Database-Issue) (2015)
Evangelos Pafilis, Sune Pletscher-Frankild, Julia Schnetzer, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Katerina Vasileiadou, Patrick Leary, Jennifer Hammock, Katja Schulz, Cynthia Sims Parr, Christos Arvanitidis, Lars Juhl Jensen
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinform. 31 (11) (2015)
Sampo Pyysalo, Jorge Campos, Juan Miguel Cejuela, Filip Ginter, Kai Hakala, Chen Li, Pontus Stenetorp, Lars Juhl Jensen
Sharing annotations better: RESTful Open Annotation. ACL (System Demonstrations) (2015)
Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi Tsafou, Michael Kuhn, Peer Bork, Lars Juhl Jensen, Christian von Mering
STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43 (Database-Issue) (2015)
Søren Mørk, Sune Pletscher-Frankild, Albert Pallejà Caro, Jan Gorodkin, Lars Juhl Jensen
Protein-driven inference of miRNA-disease associations. Bioinform. 30 (3) (2014)
Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas, Toni Gabaldón, Thomas Rattei, Christopher J. Creevey, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork
eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42 (Database-Issue) (2014)
Michael Kuhn, Damian Szklarczyk, Sune Pletscher-Frankild, Thomas H. Blicher, Christian von Mering, Lars Juhl Jensen, Peer Bork
STITCH 4: integration of protein-chemical interactions with user data. Nucleic Acids Res. 42 (Database-Issue) (2014)
Janos X. Binder, Sune Pletscher-Frankild, Kalliopi Tsafou, Christian Stolte, Seán I. O'Donoghue, Reinhard Schneider, Lars Juhl Jensen
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database J. Biol. Databases Curation 2014 (2014)
Robert Eriksson, Peter Bjødstrup Jensen, Sune Frankild, Lars Juhl Jensen, Søren Brunak
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text. J. Am. Medical Informatics Assoc. 20 (5) (2013)
Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE (2013)
Christian Theil Have, Lars Juhl Jensen
Are graph databases ready for bioinformatics? Bioinform. 29 (24) (2013)
Andrea Franceschini, Damian Szklarczyk, Sune Frankild, Michael Kuhn, Milan Simonovic, Alexander Roth, Jianyi Lin, Pablo Minguez, Peer Bork, Christian von Mering, Lars Juhl Jensen
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41 (Database-Issue) (2013)
Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Christian von Mering, Lars Juhl Jensen, Peer Bork
STITCH 3: zooming in on protein-chemical interactions. Nucleic Acids Res. 40 (Database-Issue) (2012)
Larry Croft, Damian Szklarczyk, Lars Juhl Jensen, Jan Gorodkin
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs. BMC Syst. Biol. 6 (2012)
Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res. 40 (Database-Issue) (2012)
Albert Pallejà, Heiko Horn, Sabrina Eliasson, Lars Juhl Jensen
DistiLD Database: diseases and traits in linkage disequilibrium blocks. Nucleic Acids Res. 40 (Database-Issue) (2012)
Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39 (Database-Issue) (2011)
Giovanni Marco Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, Colin S. Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M. Invergo, Lars Juhl Jensen, Jaume Bertranpetit, Hafid Laayouni
Ten Simple Rules for Getting Help from Online Scientific Communities. PLoS Comput. Biol. 7 (9) (2011)
Holger Dinkel, Claudia Chica, Allegra Via, Cathryn M. Gould, Lars Juhl Jensen, Toby J. Gibson, Francesca Diella
Phospho.ELM: a database of phosphorylation sites - update 2011. Nucleic Acids Res. 39 (Database-Issue) (2011)
Lars Juhl Jensen, Alex Bateman
The rise and fall of supervised machine learning techniques. Bioinform. 27 (24) (2011)
Francisco S. Roque, Peter Bjødstrup Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas F. Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. PLoS Comput. Biol. 7 (8) (2011)
Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert
BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput. Biol. 7 (10) (2011)
Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Monica Campillos, Christian von Mering, Lars Juhl Jensen, Andreas Beyer, Peer Bork
STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res. 38 (Database-Issue) (2010)
Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen
Reflect: A practical approach to web semantics. J. Web Semant. 8 (2-3) (2010)
Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res. 38 (Database-Issue) (2010)
Nicholas Paul Gauthier, Lars Juhl Jensen, Rasmus Wernersson, Søren Brunak, Thomas Skøt Jensen
Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results. Nucleic Acids Res. 38 (Database-Issue) (2010)
Murat Iskar, Monica Campillos, Michael Kuhn, Lars Juhl Jensen, Vera van Noort, Peer Bork
Drug-Induced Regulation of Target Expression. PLoS Comput. Biol. 6 (9) (2010)
Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering
STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37 (Database-Issue) (2009)
Neil F. W. Saunders, Pedro Beltrão, Lars Juhl Jensen, Daniel Jurczak, Roland Krause, Michael Kuhn, Shirley Wu
Microblogging the ISMB: A New Approach to Conference Reporting. PLoS Comput. Biol. 5 (1) (2009)
Rune Linding, Lars Juhl Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B. Yaffe, Tony Pawson
NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Res. 36 (Database-Issue) (2008)
Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl Jensen, Peer Bork
STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res. 36 (Database-Issue) (2008)
Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork
eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. 36 (Database-Issue) (2008)
Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia Urdiales, Andreas Gewiess, Lars Juhl Jensen, Reinhard Schneider, Roman Skoblo, Robert B. Russell, Philip E. Bourne, Peer Bork, Robert Preissner
SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res. 36 (Database-Issue) (2008)
Nicholas Paul Gauthier, Malene Erup Larsen, Rasmus Wernersson, Ulrik de Lichtenberg, Lars Juhl Jensen, Søren Brunak, Thomas Skøt Jensen
Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Res. 36 (Database-Issue) (2008)
Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork
STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35 (Database-Issue) (2007)
Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork
Extraction of regulatory gene/protein networks from Medline. Bioinform. 22 (6) (2006)
Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork, Søren Brunak
Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinform. 21 (7) (2005)
Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33 (Database-Issue) (2005)
Parantu K. Shah, Lars Juhl Jensen, Stéphanie Boué, Peer Bork
Extraction of Transcript Diversity from Scientific Literature. PLoS Comput. Biol. 1 (1) (2005)
Lars Juhl Jensen, Julien Lagarde, Christian von Mering, Peer Bork
ArrayProspector: a web resource of functional associations inferred from microarray expression data. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, Isabel Rojas
Extracting Regulatory Gene Expression Networks From Pubmed. ACL (2004)
Jasmin Saric, Lars Juhl Jensen, Isabel Rojas
Large-scale extraction of gene regulation for model organisms in an ontological context. Silico Biol. 5 (1) (2004)
Lars Juhl Jensen, Ramneek Gupta, Hans Henrik Stærfeldt, Søren Brunak
Prediction of human protein function according to Gene Ontology categories. Bioinform. 19 (5) (2003)
Lars Juhl Jensen, Steen Knudsen
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation. Bioinform. 16 (4) (2000)