Martijn A. Huynen

Publication Activity (10 Years)

Years Active: 1989-2023
Publications (10 Years): 4

Top Topics

Biological Processes

Gene Expression Microarray Data

High Throughput

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Joeri van Strien, Felix Evers, Madhurya Lutikurti, Stijn L. Berendsen, Alejandro Garanto, Geert-Jan van Gemert, Alfredo Cabrera-Orefice, Richard J. Rodenburg, Ulrich Brandt, Taco W. A. Kooij, Martijn A. Huynen
Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution. PLoS Comput. Biol. 19 (8) (2023)
Lisette Meerstein-Kessel, Jeron Venhuizen, Daniel Garza, Nicolas Pröllochs, Emma J. Vos, Joshua M. Obiero, Philip L. Felgner, Robert W. Sauerwein, Marynthe Peters, Annie S. P. Yang, Martijn A. Huynen
Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies. PLoS Comput. Biol. 17 (4) (2021)
Joeri Van Strien, Sergio Guerrero-Castillo, Iliana A Chatzispyrou, Riekelt H. Houtkooper, Ulrich Brandt, Martijn A. Huynen
COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome. Bioinform. 35 (17) (2019)
Radek Szklarczyk, Wout Megchelenbrink, Pavel Cizek, Marie Ledent, Gonny Velemans, Damian Szklarczyk, Martijn A. Huynen
WeGET: predicting new genes for molecular systems by weighted co-expression. Nucleic Acids Res. 44 (Database-Issue) (2016)
Robin van der Lee, Qian Feng, Martijn A. Langereis, Rob ter Horst, Radek Szklarczyk, Mihai G. Netea, Arno C. Andeweg, Frank J. M. van Kuppeveld, Martijn A. Huynen
Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response. PLoS Comput. Biol. 11 (10) (2015)
Qingzhen Hou, Bas E. Dutilh, Martijn A. Huynen, Jaap Heringa, K. Anton Feenstra
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case. BMC Bioinform. 16 (2015)
Sergio Rossell, Martijn A. Huynen, Richard A. Notebaart
Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression Measurements. PLoS Comput. Biol. 9 (3) (2013)
Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen
FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinform. 27 (14) (2011)
Jaime Huerta-Cepas, Joaquín Dopazo, Martijn A. Huynen, Toni Gabaldón
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings Bioinform. 12 (5) (2011)
Wout Megchelenbrink, Martijn A. Huynen, Elena Marchiori
Flux Measurement Selection in Metabolic Networks. PRIB (2011)
Iziah Edwin Sama, Martijn A. Huynen
Measuring the physical cohesiveness of proteins using physical interaction enrichment. Bioinform. 26 (21) (2010)
Bas E. Dutilh, Martijn A. Huynen, Marc Strous
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. Bioinform. 25 (21) (2009)
Bas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen
Signature, a web server for taxonomic characterization of sequence samples using signature genes. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Martin Oti, Jeroen van Reeuwijk, Martijn A. Huynen, Han G. Brunner
Conserved co-expression for candidate disease gene prioritization. BMC Bioinform. 9 (2008)
René T. J. M. van der Heijden, Berend Snel, Vera van Noort, Martijn A. Huynen
Orthology prediction at scalable resolution by phylogenetic tree analysis. BMC Bioinform. 8 (2007)
Toni Gabaldón, Martijn A. Huynen
From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism. PLoS Comput. Biol. 3 (11) (2007)
Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg
Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinform. 8 (S-8) (2007)
Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen
Assessment of phylogenomic and orthology approaches for phylogenetic inference. Bioinform. 23 (7) (2007)
Stefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek
Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis
The properties of protein family space depend on experimental design. Bioinform. 21 (11) (2005)
Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33 (Database-Issue) (2005)
Toni Gabaldón, Martijn A. Huynen
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. ECCB/JBI (2005)
Harm van Bakel, Martijn A. Huynen, Cisca Wijmenga
Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway. Bioinform. 20 (16) (2004)
Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel
STRING: a database of predicted functional associations between proteins. Nucleic Acids Res. 31 (1) (2003)
Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork
Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics (1998)
Martijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler
Base Pairing Probabilities in a Complete HIV-1 RNA. J. Comput. Biol. 3 (2) (1996)
Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz
Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. KDD (1996)
Martijn A. Huynen, Paulien Hogeweg
Genetic Algorithms and Information Accumulation during the Evolution of Gene Regulation. ICGA (1989)