Bas E. Dutilh

Publication Activity (10 Years)

Years Active: 2007-2021
Publications (10 Years): 8

Top Topics

Grand Challenges

Protein Tertiary Structure

Functional Analysis

Top Venues

Publications

Nikolaos Pappas, Bas E. Dutilh
Finding functional associations between prokaryotic virus orthologous groups: a proof of concept. BMC Bioinform. 22 (1) (2021)
Marleen Balvert, Xiao Luo, Ernestina Hauptfeld, Alexander Schönhuth, Bas E. Dutilh
OGRE: Overlap Graph-based metagenomic Read clustEring. Bioinform. 37 (7) (2021)
Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert A. Edwards, Francisco Rodríguez-Valera
RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content. Patterns 2 (7) (2021)
Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M. Deist, Christine Eyler, Bas E. Dutilh, Alexander Schönhuth, David Craft
A Drug Recommendation System (Dr.S) for cancer cell lines. CoRR (2019)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Bojian Yin, Marleen Balvert, Rick A. A. van der Spek, Bas E. Dutilh, Sander M. Bohté, Jan Veldink, Alexander Schönhuth
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype. Bioinform. 35 (14) (2019)
Marleen Balvert, Alexander Schönhuth, Bas E. Dutilh
Metagenomic read clustering based on overlap graphs. ICCABS (2018)
Genivaldo Gueiros Z. Silva, Kevin T. Green, Bas E. Dutilh, Robert A. Edwards
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data. Bioinform. 32 (3) (2016)
Qingzhen Hou, Bas E. Dutilh, Martijn A. Huynen, Jaap Heringa, K. Anton Feenstra
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case. BMC Bioinform. 16 (2015)
Genivaldo Gueiros Z. Silva, Bas E. Dutilh, T. David Matthews, Keri Elkins, Robert Schmieder, Elizabeth A. Dinsdale, Robert A. Edwards
Combining de novo and reference-guided assembly with scaffold_builder. Source Code Biol. Medicine 8 (2013)
Bas E. Dutilh, Robert Schmieder, James Nulton, Ben Felts, Peter Salamon, Robert A. Edwards, John Mokili
Reference-independent comparative metagenomics using cross-assembly: crAss. Bioinform. 28 (24) (2012)
Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen
FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinform. 27 (14) (2011)
Bas E. Dutilh, Martijn A. Huynen, Marc Strous
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. Bioinform. 25 (21) (2009)
Bas E. Dutilh, Ying He, Maarten L. Hekkelman, Martijn A. Huynen
Signature, a web server for taxonomic characterization of sequence samples using signature genes. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Bas E. Dutilh, Vera van Noort, René T. J. M. van der Heijden, T. Boekhout, Berend Snel, Martijn A. Huynen
Assessment of phylogenomic and orthology approaches for phylogenetic inference. Bioinform. 23 (7) (2007)