Mark D. Robinson

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 10

Top Topics

Hierarchically Structured

Grand Challenges

Metadata Schema

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Publications

Peiying Cai, Mark D. Robinson, Simone Tiberi
: spatially variable gene detection via differential expression testing of spatial clusters. Bioinform. 40 (2) (2024)
Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. CoRR (2024)
Reto Gerber, Mark D. Robinson
Censcyt: censored covariates in differential abundance analysis in cytometry. BMC Bioinform. 22 (1) (2021)
Helena L. Crowell, Stéphane Chevrier, Andrea Jacobs, Sujana Sivapatham, Tumor Profiler consortium, Bernd Bodenmiller, Mark D. Robinson
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. F1000Research 9 (2020)
Ruizhu Huang, Charlotte Soneson, Felix G. M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson
TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Research 9 (2020)
Jochen T. Bick, Shuqin Zeng, Mark D. Robinson, Susanne E. Ulbrich, Stefan Bauersachs
Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. Database J. Biol. Databases Curation 2019 (2019)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Mark D. Robinson
Financializing epistemic norms in contemporary biomedical innovation. Synth. 196 (11) (2019)
Angelo Duò, Mark D. Robinson, Charlotte Soneson
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research 7 (2018)
Charlotte Soneson, Mark D. Robinson
Towards unified quality verification of synthetic count data with countsimQC. Bioinform. 34 (4) (2018)
Haoyang Cai, Nitin Kumar, Homayoun C. Bagheri, Christian von Mering, Mark D. Robinson, Michael Baudis
Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: A survey of 22, 347 genomic copy number profiles. IWBBIO (2013)
Marc Fiume, Eric J. M. Smith, Andrew Brook, Dario Strbenac, Brian Turner, Aziz M. Mezlini, Mark D. Robinson, Shoshana J. Wodak, Michael Brudno
Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Aaron L. Statham, Dario Strbenac, Marcel W. Coolen, Clare Stirzaker, Susan J. Clark, Mark D. Robinson
: an R package for the analysis of enrichment-based epigenomic data. Bioinform. 26 (13) (2010)
Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth
: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform. 26 (1) (2010)
Mark D. Robinson, Terence P. Speed
Differential splicing using whole-transcript microarrays. BMC Bioinform. 10 (2009)
E. Purdom, Ken M. Simpson, Mark D. Robinson, J. G. Conboy, A. V. Lapuk, Terence P. Speed
FIRMA: a method for detection of alternative splicing from exon array data. Bioinform. 24 (15) (2008)
Mark D. Robinson, Terence P. Speed
A comparison of Affymetrix gene expression arrays. BMC Bioinform. 8 (2007)
Mark D. Robinson, David P. De Souza, Woon Wai Keen, Eleanor C. Saunders, Malcolm J. McConville, Terence P. Speed, Vladimir A. Likic
A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. BMC Bioinform. 8 (2007)
Mark D. Robinson, Gordon K. Smyth
Moderated statistical tests for assessing differences in tag abundance. Bioinform. 23 (21) (2007)
Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB (2005)
Kimberly N. Lewis, Mark D. Robinson, Timothy R. Hughes, Christopher W. V. Hogue
MyMed: A database system for biomedical research on MEDLINE data. IBM Syst. J. 43 (4) (2004)
Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes
FunSpec: a web-based cluster interpreter for yeast. BMC Bioinform. 3 (2002)