Atul J. Butte

ORCID

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 44

Top Venues

CoRR

AMIA

J. Am. Medical Informatics Assoc.

npj Digit. Medicine

Publications

Brenda Y. Miao, Christopher Y. K. Williams, Ebenezer Chinedu-Eneh, Travis Zack, Emily Alsentzer, Atul J. Butte, Irene Y. Chen
Identifying Reasons for Contraceptive Switching from Real-World Data Using Large Language Models. CoRR (2024)
Shenghuan Sun, Gregory M. Goldgof, Alexander Schubert, Zhiqing Sun, Thomas Hartvigsen, Atul J. Butte, Ahmed M. Alaa
Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding. CoRR (2024)
Brenda Y. Miao, Irene Y. Chen, Christopher YK Williams, Jaysón M. Davidson, Augusto Garcia-Agundez, Harry Sun, Travis Zack, Atul J. Butte, Madhumita Sushil
Updating the Minimum Information about CLinical Artificial Intelligence (MI-CLAIM) checklist for generative modeling research. CoRR (2024)
Madhumita Sushil, Travis Zack, Divneet Mandair, Zhiwei Zheng, Ahmed Wali, Yan-Ning Yu, Yuwei Quan, Atul J. Butte
A comparative study of zero-shot inference with large language models and supervised modeling in breast cancer pathology classification. CoRR (2024)
Nikita Mehandru, Brenda Y. Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul J. Butte, Ahmed M. Alaa
Evaluating large language models as agents in the clinic. npj Digit. Medicine 7 (1) (2024)
Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul
Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. CoRR (2024)
Nikita Mehandru, Brenda Y. Miao, Eduardo Rodriguez Almaraz, Madhumita Sushil, Atul J. Butte, Ahmed M. Alaa
Large Language Models as Agents in the Clinic. CoRR (2023)
Michelle Wang, Madhumita Sushil, Brenda Y. Miao, Atul J. Butte
Bottom-up and top-down paradigms of artificial intelligence research approaches to healthcare data science using growing real-world big data. J. Am. Medical Informatics Assoc. 30 (7) (2023)
Shenghuan Sun, Gregory M. Goldgof, Atul J. Butte, Ahmed M. Alaa
Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback. NeurIPS (2023)
Shenghuan Sun, Travis Zack, Christopher Y. K. Williams, Atul J. Butte, Madhumita Sushil
Revealing the impact of social circumstances on the selection of cancer therapy through natural language processing of social work notes. CoRR (2023)
Shenghuan Sun, Gregory M. Goldgof, Atul J. Butte, Ahmed M. Alaa
Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback. CoRR (2023)
Madhumita Sushil, Vanessa E. Kennedy, Brenda Y. Miao, Divneet Mandair, Travis Zack, Atul J. Butte
Extracting detailed oncologic history and treatment plan from medical oncology notes with large language models. CoRR (2023)
Madhumita Sushil, Atul J. Butte, Ewoud Schuit, Maarten van Smeden, Artuur M. Leeuwenberg
Cross-institution text mining to uncover clinical associations: a case study relating social factors and code status in intensive care medicine. CoRR (2023)
Shenghuan Sun, Travis Zack, Madhumita Sushil, Atul J. Butte
Topic Modeling on Clinical Social Work Notes for Exploring Social Determinants of Health Factors. CoRR (2022)
J. Russell Huie, Rohit Vashisht, Anoop Galivanche, Constance Hadjadj, Saam Morshed, Atul J. Butte, Adam R. Ferguson, Conor O'Neill
Toward a causal model of chronic back pain: Challenges and opportunities. Frontiers Comput. Neurosci. 16 (2022)
Madhumita Sushil, Dana Ludwig, Atul J. Butte, Vivek A. Rudrapatna
Training a Transferrable Clinical Language Model from 75 million Notes. AMIA (2022)
Charlotte Nelson, Riley Bove, Atul J. Butte, Sergio E. Baranzini
Embedding electronic health records onto a knowledge network recognizes prodromal features of multiple sclerosis and predicts diagnosis. J. Am. Medical Informatics Assoc. 29 (3) (2022)
Madhumita Sushil, Dana Ludwig, Atul J. Butte, Vivek A. Rudrapatna
Developing a general-purpose clinical language inference model from a large corpus of clinical notes. CoRR (2022)
Lakshmi Radhakrishnan, Gundolf Schenk, Kathlene Muenzen, Boris Oskotsky, Sharat Israni, Atul J. Butte
Deidentifying a Corpus of 100 Million Clinical Text Documents for Information Extraction: Lessons Learned. AMIA (2022)
Jaysón M. Davidson, Rohit Davidson, Ayan Patel, Atul J. Butte
Understanding the Impact of Demographics and Socioeconomic Parameters on Treatment Selection and Utilization in Type 2 Diabetes. AMIA (2022)
Daniel R. Wong, Jay Conrad, Noah R. Johnson, Jacob Ayers, Annelies Laeremans, Joanne C. Lee, Jisoo Lee, Stanley B. Prusiner, Sourav Bandyopadhyay, Atul J. Butte, Nick A. Paras, Michael J. Keiser
Trans-channel fluorescence learning improves high-content screening for Alzheimer's disease therapeutics. Nat. Mach. Intell. 4 (6) (2022)
Atul J. Butte, Christopher A. Longhurst, Amy Abernethy, Gretchen P. Jackson, Philip R. O. Payne
Use of Healthcare Information Technology and Data Platforms to Inform Pandemic Response: Perspectives at the Intersection of Academic Healthcare Provider Organizations and Industry Partners. AMIA (2021)
Xinran Liu, James Anstey, Ron Li, Chethan Sarabu, Reiri Sono, Atul J. Butte
Rethinking PICO in the Machine Learning Era: ML-PICO. Appl. Clin. Inform. 12 (02) (2021)
Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28 (2) (2021)
Navchetan Kaur, Boris Oskotsky, Atul J. Butte, Zicheng Hu
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. AMIA (2021)
Douglas Arneson, Rohit Vashisht, Vivek A. Rudrapatna, Atul J. Butte
A Generalizable Framework for Cost-Effectiveness Analysis of Antihypertensive Drugs Leveraging Real-World Evidence. AMIA (2021)
Nisarg A. Patel, Atul J. Butte
Characteristics and challenges of the clinical pipeline of digital therapeutics. npj Digit. Medicine 3 (2020)
Beau Norgeot, Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin S. Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore C. Goldstein, Atul J. Butte
Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. npj Digit. Medicine 3 (2020)
Zicheng Hu, Benjamin S. Glicksberg, Atul J. Butte
Robust prediction of clinical outcomes using cytometry data. Bioinform. 35 (7) (2019)
Benjamin S. Glicksberg, Boris Oskotsky, Phyllis M. Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson, Debajyoti Datta, Vivek A Rudrapatna, Nadav Rappoport, Mark M. Shervey, Riccardo Miotto, Theodore C. Goldstein, Eugenia Rutenberg, Remi Frazier, Nelson Lee, Sharat Israni, Rick Larsen, Bethany Percha, Li Li, Joel T. Dudley, Nicholas P. Tatonetti, Atul J. Butte
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Bioinform. 35 (21) (2019)
Yves A. Lussier, Atul J. Butte, Haiquan Li, Rong Chen, Jason H. Moore
Translational informatics of population Health: How large biomolecular and clinical datasets unite. PSB (2019)
Alvin Rajkomar, Eyal Oren, Kai Chen, Andrew M. Dai, Nissan Hajaj, Michaela Hardt, Peter J. Liu, Xiaobing Liu, Jake Marcus, Mimi Sun, Patrik Sundberg, Hector Yee, Kun Zhang, Yi Zhang, Gerardo Flores, Gavin E. Duggan, Jamie Irvine, Quoc Le, Kurt Litsch, Alexander Mossin, Justin Tansuwan, De Wang, James Wexler, Jimbo Wilson, Dana Ludwig, Samuel L. Volchenboum, Katherine Chou, Michael Pearson, Srinivasan Madabushi, Nigam H. Shah, Atul J. Butte, Michael D. Howell, Claire Cui, Gregory S. Corrado, Jeffrey Dean
Scalable and accurate deep learning with electronic health records. npj Digit. Medicine 1 (2018)
Alvin Rajkomar, Eyal Oren, Kai Chen, Andrew M. Dai, Nissan Hajaj, Peter J. Liu, Xiaobing Liu, Mimi Sun, Patrik Sundberg, Hector Yee, Kun Zhang, Gavin E. Duggan, Gerardo Flores, Michaela Hardt, Jamie Irvine, Quoc V. Le, Kurt Litsch, Jake Marcus, Alexander Mossin, Justin Tansuwan, De Wang, James Wexler, Jimbo Wilson, Dana Ludwig, Samuel L. Volchenboum, Katherine Chou, Michael Pearson, Srinivasan Madabushi, Nigam H. Shah, Atul J. Butte, Michael Howell, Claire Cui, Greg Corrado, Jeff Dean
Scalable and accurate deep learning for electronic health records. CoRR (2018)
Beau Norgeot, Dmytro Lituiev, Benjamin S. Glicksberg, Atul J. Butte
Time Aggregation and Model Interpretation for Deep Multivariate Longitudinal Patient Outcome Forecasting Systems in Chronic Ambulatory Care. CoRR (2018)
Jieming Chen, Sanchita Bhattacharya, Marina Sirota, Minnie M. Sarwal, Atul J. Butte
Ethnic and gender disparity in organ transplant clinical trials and electronic health records. CRI (2017)
Nophar Geifman, Sanchita Bhattacharya, Atul J. Butte
Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression. J. Am. Medical Informatics Assoc. 23 (3) (2016)
Nophar Geifman, Atul J. Butte
Do Cancer Clinical Trial Populations Truly Represent Cancer Patients? A Comparison of Open Clinical Trials to the Cancer Genome Atlas. PSB (2016)
Jiao Li, Si Zheng, Bin Chen, Atul J. Butte, S. Joshua Swamidass, Zhiyong Lu
A survey of current trends in computational drug repositioning. Briefings Bioinform. 17 (1) (2016)
Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLoS Comput. Biol. 12 (4) (2016)
Hua Fan-Minogue, Bin Chen, Weronika Sikora-Wohlfeld, Marina Sirota, Atul J. Butte
A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets. Pacific Symposium on Biocomputing (2015)
Dexter Hadley, James Pan, Osama M. El-Sayed, Jihad Al-Jabban, Imad Al-Jabban, Tej Azad, Shuaib Raza, Mohamed Hadied, Bin Chen, Hyojung Paik, Sanchita Bhattacharya, Marina Sirota, Atul J. Butte
Human Computation of Big Data in Biomedicine: Making STAR annotations for large scale functional characterization of disease. AMIA (2015)
Menghua Wu, Marina Sirota, Atul J. Butte, Bin Chen
Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov. Pacific Symposium on Biocomputing (2015)
Patrick J. Dunn, Elizabeth Thomson, John Campbell, Thomas Smith, Vincent Desborough, Jeffrey A. Wiser, Henry Schaefer, Sanchita Bhattacharya, Atul J. Butte, Sandra Andorf, Mazen Nasrallah
ImmPort: Shared research data for bioinformatics and immunology. BIBM (2015)
Atul J. Butte, Nigam Shah, Nicholas P. Tatonetti, Hua Xu, Ping Zhang
Recent Advances in Computational Drug Repositioning. AMIA (2015)
Luke Yancy Jr., Atul J. Butte
Investigating the Genetic Architecture of Pulmonary Arterial Hypertension Shared with Other Diseases. AMIA (2014)
S. Joshua Swamidass, Zhiyong Lu, Pankaj Agarwal, Atul J. Butte
Session Introduction. Pacific Symposium on Biocomputing (2014)
Sandra Andorf, Jennifer B. Bollyky, Patrick J. Dunn, Jeffrey A. Wiser, Sanchita Bhattacharya, Atul J. Butte
Towards the characterization of normal peripheral immune cells with data from ImmPort. BCB (2014)
Ravi D. Shankar, Sandra Andorf, Sanchita Bhattacharya, Jeffrey A. Wiser, Atul J. Butte
RImmPort: enabling ready-for-analysis immunology research data. BCB (2014)
Atul J. Butte
Translating a trillion points of data into therapies, diagnostics, and new insights into disease. DTMBIO (2013)
Atul J. Butte, Lucila Ohno-Machado
Making it personal: translational bioinformatics. J. Am. Medical Informatics Assoc. 20 (4) (2013)
Zhiyong Lu, Pankaj Agarwal, Atul J. Butte
Session Introduction. Pacific Symposium on Biocomputing (2013)
Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte
Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records. Pacific Symposium on Biocomputing (2013)
Raymond K. Auerbach, Bin Chen, Atul J. Butte
Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool. Bioinform. 29 (15) (2013)
Atul J. Butte, Doheon Lee, Hua Xu, Min Song
DTMBIO 2013: international workshop on data and text mining in biomedical informatics. CIKM (2013)
David Ruau, Joel Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst
Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases. PLoS Comput. Biol. 8 (6) (2012)
Alexander A. Morgan, Vasilios J. Pyrgos, Kari C. Nadeau, Peter R. Williamson, Atul J. Butte
Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Purvesh Khatri, Marina Sirota, Atul J. Butte
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Comput. Biol. 8 (2) (2012)
Chirag J. Patel, Rong Chen, Atul J. Butte
Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease. Bioinform. 28 (12) (2012)
Alexander A. Morgan, Rong Chen, Atul J. Butte
Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays. J. Am. Medical Informatics Assoc. 19 (e1) (2012)
Rong Chen, Atul J. Butte
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders. Pacific Symposium on Biocomputing (2011)
Atul J. Butte, Nigam H. Shah
. J. Am. Medical Informatics Assoc. 18 (4) (2011)
Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado
Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. 18 (4) (2011)
Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. Bioinform. 27 (23) (2011)
Joel Dudley, Tarangini Deshpande, Atul J. Butte
Exploiting drug-disease relationships for computational drug repositioning. Briefings Bioinform. 12 (4) (2011)
Joel Dudley, Rong Chen, Atul J. Butte
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology. Pacific Symposium on Biocomputing (2011)
David Ruau, Michael Mbagwu, Joel T. Dudley, Vijay Krishnan, Atul J. Butte
Comparison of automated and human assignment of MeSH terms on publicly-available molecular datasets. J. Biomed. Informatics 44 (Supplement-1) (2011)
David P. Chen, Alexander A. Morgan, Atul J. Butte
Validating pathophysiological models of aging using clinical electronic medical records. J. Biomed. Informatics 43 (3) (2010)
Sanchita Bhattacharya, Shai Shen-Orr, Holden T. Maecker, Laura Lazzeroni, Gary E. Swan, J. David Clark, Martin S. Angst, Atul J. Butte, Mark M. Davis
Immunological response in normal healthy twins across age. BCB (2010)
Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte
Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions. PLoS Comput. Biol. 6 (9) (2010)
Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. BMC Bioinform. 11 (S-9) (2010)
Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte
Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets. PLoS Comput. Biol. 6 (2) (2010)
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte
Content-based microarray search using differential expression profiles. BMC Bioinform. 11 (2010)
Nicholas P. Tatonetti, Joel Dudley, Hersh Sagreiya, Atul J. Butte, Russ B. Altman
An integrative method for scoring candidate genes from association studies: application to warfarin dosing. BMC Bioinform. 11 (S-9) (2010)
David P. Chen, Joel Dudley, Atul J. Butte
Latent physiological factors of complex human diseases revealed by independent component analysis of clinarrays. BMC Bioinform. 11 (S-9) (2010)
Yves A. Lussier, Atul J. Butte, Lawrence Hunter
Current methodologies for translational bioinformatics. J. Biomed. Informatics 43 (3) (2010)
Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou
A Classifier-based approach to identify genetic similarities between diseases. Bioinform. 25 (12) (2009)
Adam D. Grossman, Mitchell J. Cohen, Geoffrey T. Manley, Atul J. Butte
Infection in the intensive care unit alters physiological networks. BMC Bioinform. 10 (S-9) (2009)
Joel Dudley, Atul J. Butte
A Quick Guide for Developing Effective Bioinformatics Programming Skills. PLoS Comput. Biol. 5 (12) (2009)
Yueyi I. Liu, Paul H. Wise, Atul J. Butte
The "etiome": identification and clustering of human disease etiological factors. BMC Bioinform. 10 (S-2) (2009)
Joel Dudley, Atul J. Butte
Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology. Pacific Symposium on Biocomputing (2009)
Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen
Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinform. 10 (S-2) (2009)
Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Atul J. Butte, Maricel G. Kann
Session Introduction. Pacific Symposium on Biocomputing (2009)
Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya
Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinform. 10 (S-2) (2009)
Shai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David L. Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte
Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System. Pacific Symposium on Biocomputing (2009)
Sangeeta B. English, Shou-Ching Shih, Marco Ramoni, Lois E. Smith, Atul J. Butte
Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR. J. Biomed. Informatics 42 (2) (2009)
Atul J. Butte
Viewpoint Paper: Translational Bioinformatics: Coming of Age. J. Am. Medical Informatics Assoc. 15 (6) (2008)
Yves A. Lussier, Younghee Lee, Predrag Radivojac, Yanay Ofran, Marco Punta, Atul J. Butte, Maricel G. Kann
Session Introduction. Pacific Symposium on Biocomputing (2008)
Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinform. 9 (2008)
David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte
Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. Pacific Symposium on Biocomputing (2008)
Joel Dudley, David P. Chen, Atul J. Butte
Using SNOMED CT For Translational Genomics Data Integration. KR-MED (2008)
Joel Dudley, Atul J. Butte
Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining. Pacific Symposium on Biocomputing (2008)
David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte
Clinical Arrays of Laboratory Measures, or "Clinarrays", Built from an Electronic Health Record Enable Disease Subtyping by Severity. AMIA (2007)
Sangeeta B. English, Atul J. Butte
Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes. Bioinform. 23 (21) (2007)
Yi-An Lin, Annie P. Chiang, Ray Lin, Peggy Yao, Rong Chen, Atul J. Butte
Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository. AMIA (2007)
Atul J. Butte, Rong Chen
Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics. AMIA (2006)
Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinform. 6 (2005)
Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte
Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinform. 5 (2004)
Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane
Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinform. 4 (2003)
Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte
PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinform. 19 (6) (2003)
Peter J. Park, Atul J. Butte, Isaac S. Kohane
Comparing expression profiles of genes with similar promoter regions. Bioinform. 18 (12) (2002)

Atul J. Butte.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Atul J. Butte