Purvesh Khatri

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 13

Top Topics

Gene Expression

Infectious Disease

Biologically Meaningful

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Ljubomir J. Buturovic, Michael B. Mayhew, Roland Lüthy, Kirindi Choi, Uros Midic, Nandita Damaraju, Yehudit Hasin-Brumshtein, Amitesh Pratap, Rhys M. Adams, João F. Henriques, Ambika Srinath, Paul Fleming, Claudia Pereira, Oliver Liesenfeld, Purvesh Khatri, Timothy Sweeney
Development of Machine Learning Classifiers for Blood-based Diagnosis and Prognosis of Suspected Acute Infections and Sepsis. CoRR (2024)
Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A. Musen
Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models. CoRR (2024)
Laurynas Kalesinskas, Sanjana Gupta, Purvesh Khatri
Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology. PLoS Comput. Biol. 18 (6) (2022)
Lawrence Bai, Madeleine K. D. Scott, Ethan Steinberg, Laurynas Kalesinskas, Aida Habtezion, Nigam H. Shah, Purvesh Khatri
Computational drug repositioning of atorvastatin for ulcerative colitis. J. Am. Medical Informatics Assoc. 28 (11) (2021)
Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis
SIMON: Open-Source Knowledge Discovery Platform. Patterns 2 (1) (2021)
Madeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri
A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker. PSB (2021)
Riya Gupta, Aditya M. Rao, Lara Murphy Jones, Purvesh Khatri
Formulating a gene signature for diagnosis of autoimmune and infectious diseases. BCB (2021)
Winston A. Haynes, Francesco Vallania, Charles Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew D. Li, Timothy E. Sweeney, Purvesh Khatri
Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility. PSB (2017)
Winston A. Haynes, Aurelie Tomczak, Purvesh Khatri
Gene annotation bias impedes biomedical research. AMIA (2017)
Winston A. Haynes, Francesco Vallania, Purvesh Khatri
Complementing single-cell RNA-seq using bulk transcriptional profiles. BIBM (2017)
William Yuan, Dadi Jiang, Dhanya K. Nambiar, Lydia P. Liew, Michael P. Hay, Joshua Bloomstein, Peter Lu, Brandon Turner, Quynh-Thu Le, Robert Tibshirani, Purvesh Khatri, Mark G. Moloney, Albert C. Koong
Chemical Space Mimicry for Drug Discovery. J. Chem. Inf. Model. 57 (4) (2017)
Madeleine Scott, Francesco Vallania, Purvesh Khatri
Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status. PSB (2017)
Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Alexander A. Morgan, Matthew D. Li, Achal S. Achrol, Purvesh Khatri, Samuel H. Cheshier
Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls. Pacific Symposium on Biocomputing (2014)
Purvesh Khatri, Marina Sirota, Atul J. Butte
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Comput. Biol. 8 (2) (2012)
Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. BMC Bioinform. 11 (S-9) (2010)
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero
A novel signaling pathway impact analysis. Bioinform. 25 (1) (2009)
Calin Voichita, Purvesh Khatri, Sorin Draghici
Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls. IJCNN (2008)
Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici
Semantic Analysis of Genome Annotations using Weighting Schemes. CIBCB (2007)
Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici
Onto-Tools: new additions and improvements in 2006. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks. CIARP (2007)
Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri
Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinform. 22 (23) (2006)
Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici
A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. CIBCB (2005)
Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici
Recent additions and improvements to the Onto-Tools. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici
A semantic analysis of the annotations of the human genome. Bioinform. 21 (16) (2005)
Purvesh Khatri, Sorin Draghici
Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinform. 21 (18) (2005)
Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman
Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats. Pacific Symposium on Biocomputing (2005)
Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res. 31 (13) (2003)