Hua Xu

ORCID

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 189

Top Venues

AMIA

J. Am. Medical Informatics Assoc.

CoRR

BMC Medical Informatics Decis. Mak.

Publications

Jiayi Tong, Chongliang Luo, Yifei Sun, Rui Duan, M. Elle Saine, Lifeng Lin, Yifan Peng, Yiwen Lu, Anchita Batra, Anni Pan, Olivia Wang, Ruowang Li, Arielle Marks-Anglin, Yuchen Yang, Xu Zuo, Yulun Liu, Jiang Bian, Stephen E. Kimmel, Keith Hamilton, Adam Cuker, Rebecca A. Hubbard, Hua Xu, Yong Chen
Confidence score: a data-driven measure for inclusive systematic reviews considering unpublished preprints. J. Am. Medical Informatics Assoc. 31 (4) (2024)
Yu Yin, Hyunjae Kim, Xiao Xiao, Chih-Hsuan Wei, Jaewoo Kang, Zhiyong Lu, Hua Xu, Meng Fang, Qingyu Chen
Augmenting Biomedical Named Entity Recognition with General-domain Resources. CoRR (2024)
Mingchen Li, Anne H. Blaes, Steven Johnson, Hongfang Liu, Hua Xu, Rui Zhang
CancerLLM: A Large Language Model in Cancer Domain. CoRR (2024)
Jianping He, Fang Li, Jianfu Li, Xinyue Hu, Yi Nian, Yang Xiang, Jingqi Wang, Qiang Wei, Yiming Li, Hua Xu, Cui Tao
Prompt Tuning in Biomedical Relation Extraction. J. Heal. Informatics Res. 8 (2) (2024)
Zhao Li, Lan Lan, Yujia Zhou, Ruoxing Li, Kenneth D. Chavin, Hua Xu, Liang Li, David J. H. Shih, W. Jim Zheng
Developing deep learning-based strategies to predict the risk of hepatocellular carcinoma among patients with nonalcoholic fatty liver disease from electronic health records. J. Biomed. Informatics 152 (2024)
Yu Huang, Jingchuan Guo, Wei-Han William Chen, Hsin-Yueh Lin, Huilin Tang, Fei Wang, Hua Xu, Jiang Bian
A scoping review of fair machine learning techniques when using real-world data. J. Biomed. Informatics 151 (2024)
Tianyu Liu, Yijia Xiao, Xiao Luo, Hua Xu, W. Jim Zheng, Hongyu Zhao
Geneverse: A collection of Open-source Multimodal Large Language Models for Genomic and Proteomic Research. CoRR (2024)
Huixue Zhou, Robin Austin, Sheng-Chieh Lu, Greg M. Silverman, Yuqi Zhou, Halil Kilicoglu, Hua Xu, Rui Zhang
Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Hanlei Zhang, Hua Xu, Fei Long, Xin Wang, Kai Gao
Unsupervised Multimodal Clustering for Semantics Discovery in Multimodal Utterances. CoRR (2024)
Yiming Li, Deepthi Viswaroopan, William He, Jianfu Li, Xu Zuo, Hua Xu, Cui Tao
Improving Entity Recognition Using Ensembles of Deep Learning and Fine-tuned Large Language Models: A Case Study on Adverse Event Extraction from Multiple Sources. CoRR (2024)
Sunyang Fu, Heling Jia, Maria Vassilaki, Vipina Kuttichi Keloth, Yifang Dang, Yujia Zhou, Muskan Garg, Ronald C. Petersen, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Andrew Wen, Fang Li, Hua Xu, Cui Tao, Jungwei Fan, Hongfang Liu, Sunghwan Sohn
FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. J. Biomed. Informatics 152 (2024)
Yiwen Lu, Jiayi Tong, Jessica Chubak, Thomas Lumley, Rebecca A. Hubbard, Hua Xu, Yong Chen
Leveraging error-prone algorithm-derived phenotypes: Enhancing association studies for risk factors in EHR data. J. Biomed. Informatics 157 (2024)
Yiming Li, Wei Tao, Zehan Li, Zenan Sun, Fang Li, Susan H. Fenton, Hua Xu, Cui Tao
Artificial intelligence-powered pharmacovigilance: A review of machine and deep learning in clinical text-based adverse drug event detection for benchmark datasets. J. Biomed. Informatics 152 (2024)
Cathy Shyr, Yan Hu, Lisa Bastarache, Alex Cheng, Rizwan Hamid, Paul A. Harris, Hua Xu
Identifying and Extracting Rare Diseases and Their Phenotypes with Large Language Models. J. Heal. Informatics Res. 8 (2) (2024)
Yiming Li, Xueqing Peng, Jianfu Li, Xu Zuo, Suyuan Peng, Donghong Pei, Cui Tao, Hua Xu, Na Hong
Relation Extraction Using Large Language Models: A Case Study on Acupuncture Point Locations. CoRR (2024)
Mingchen Li, Halil Kilicoglu, Hua Xu, Rui Zhang
BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicine. CoRR (2024)
Rachael Fleurence, Jiang Bian, Xiaoyan Wang, Hua Xu, Dalia Dawoud, Mitch Higashi, Jagpreet Chhatwal
Generative AI for Health Technology Assessment: Opportunities, Challenges, and Policy Considerations. CoRR (2024)
Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Kuttichi Keloth, Xingyu Zhou, Huan He, Lucila Ohno-Machido, Yonghui Wu, Hua Xu, Jiang Bian
Me LLaMA: Foundation Large Language Models for Medical Applications. CoRR (2024)
Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng
A span-based model for extracting overlapping PICO entities from randomized controlled trial publications. J. Am. Medical Informatics Assoc. 31 (5) (2024)
Zhaoyi Chen, Hansi Zhang, Xi Yang, Songzi Wu, Xing He, Jie Xu, Jingchuan Guo, Mattia C. F. Prosperi, Fei Wang, Hua Xu, Yong Chen, Hui Hu, Steven DeKosky, Matthew Farrer, Yi Guo, Yonghui Wu, Jiang Bian
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias. Int. J. Medical Informatics 170 (2023)
Huixue Zhou, Robin Austin, Sheng-Chieh Lu, Greg M. Silverman, Yuqi Zhou, Halil Kilicoglu, Hua Xu, Rui Zhang
Complementary and Integrative Health Lexicon (CIHLex) and Entity Recognition in the Literature. CoRR (2023)
Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). J. Am. Medical Informatics Assoc. 30 (9) (2023)
Omer Anjum, Luyao Chen, Ryan Denlinger, Ejaz Anam, Dongsheng Yuan, Connie Wooldridge, Martin J. Citardi, Jiajie Zhang, Hua Xu, Xiaoqian Jiang
FinFax: Fast Interpretation of Fax with NLP. BCB (2023)
Avisha Das, Zhao Li, Qiang Wei, Jianfu Li, Liang-chin Huang, Yan Hu, Rongbin Li, Wenjin Jim Zheng, Hua Xu
Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers. MedInfo (2023)
Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. 39 (9) (2023)
Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142 (2023)
Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR (2023)
Tsung-Ting Kuo, Anh Pham, Maxim E. Edelson, Jihoon Kim, Jason Chan, Yash Gupta, Lucila Ohno-Machado, David M. Anderson, Chandrasekar Balacha, Tyler Bath, Sally L. Baxter, Andrea Becker-Pennrich, Douglas S. Bell, Elmer V. Bernstam, Ngan Chau, Michele E. Day, Jason N. Doctor, Scott L. DuVall, Robert El-Kareh, Renato Florian, Robert W. Follett, Benjamin P. Geisler, Alessandro Ghigi, Assaf Gottlieb, Ludwig Christian G. Hinske, Zhaoxian Hu, Diana Ir, Xiaoqian Jiang, Katherine K. Kim, Tara K. Knight, Jejo D. Koola, Nelson Lee, Ulrich Mansmann, Michael E. Matheny, Daniella Meeker, Zongyang Mou, Larissa Neumann, Nghia H. Nguyen, Nick Anderson, Eunice Park, Paulina Paul, Mark J. Pletcher, Kai W. Post, Clemens Rieder, Clemens Scherer, Lisa M. Schilling, Andrey Soares, Spencer L. SooHoo, Ekin Soysal, Steven Covington, Brian Tep, Brian Toy, Baocheng Wang, Zhen R. Wu, Hua Xu, Yong K. Choi, Kai Zheng, Yujia Zhou, Rachel A Zucker
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. J. Am. Medical Informatics Assoc. 30 (6) (2023)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30 (12) (2023)
Yongkang Xiao, Yu Hou, Huixue Zhou, Gayo Diallo, Marcelo Fiszman, Julian Wolfson, Halil Kilicoglu, You Chen, Hua Xu, William G. Mantyh, Rui Zhang
Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature. ICHI (2023)
Yan Hu, Yong Chen, Hua Xu
Towards More Generalizable and Accurate Sentence Classification in Medical Abstracts with Less Data. J. Heal. Informatics Res. 7 (4) (2023)
Lucila Ohno-Machado, Xiaoqian Jiang, Tsung-Ting Kuo, Shiqiang Tao, Luyao Chen, Pritham Ram, Guo-Qiang Zhang, Hua Xu
A hierarchical strategy to minimize privacy risk when linking "De-identified" data in biomedical research consortia. J. Biomed. Informatics 139 (2023)
Yiming Li, Xueqing Peng, Jianfu Li, Suyuan Peng, Donghong Pei, Cui Tao, Hua Xu, Na Hong
Development of a Natural Language Processing Tool to Extract Acupuncture Point Location Terms. ICHI (2023)
Yan Hu, Iqra Ameer, Xu Zuo, Xueqing Peng, Yujia Zhou, Zehan Li, Yiming Li, Jianfu Li, Xiaoqian Jiang, Hua Xu
Zero-shot Clinical Entity Recognition using ChatGPT. CoRR (2023)
Zehan Li, Iqra Ameer, Yan Hu, Ahmed Abdelhameed, Cui Tao, Salih Selek, Hua Xu
Suicide Tendency Prediction from Psychiatric Notes Using Transformer Models. ICHI (2023)
Rui Yang, Qingcheng Zeng, Keen You, Yujie Qiao, Lucas Huang, Chiachun Hsieh, Benjamin Rosand, Jeremy Goldwasser, Amisha D. Dave, Tiarnan D. L. Keenan, Emily Y. Chew, Dragomir Radev, Zhiyong Lu, Hua Xu, Qingyu Chen, Irene Li
MedGen: A Python Natural Language Processing Toolkit for Medical Text Processing. CoRR (2023)
Hua Xu, Ziqi Yuan, Kang Zhao, Yunfeng Xu, Jiyun Zou, Kai Gao
GAR-Net: A Graph Attention Reasoning Network for conversation understanding. Knowl. Based Syst. 240 (2022)
Hua Xu, Li Wang, Yaojia Zhang
Analysis and Diagnosis of Shielded Cable Faults Based on Finite-Element Method and Time-Reversal Time-Frequency Domain Reflectometry. IEEE Trans. Ind. Electron. 69 (4) (2022)
Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu
A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora. BMC Medical Informatics Decis. Mak. 22 (3) (2022)
Tsung-Ting Kuo, Xiaoqian Jiang, Hua Xu, Li Xiong, Lucila Ohno-Machado
Existing and emerging privacy challenges and solutions for federated data coordination. AMIA (2022)
Yihe Liu, Ziqi Yuan, Huisheng Mao, Zhiyun Liang, Wanqiuyue Yang, Yuanzhe Qiu, Tie Cheng, Xiaoteng Li, Hua Xu, Kai Gao
Make Acoustic and Visual Cues Matter: CH-SIMS v2.0 Dataset and AV-Mixup Consistent Module. CoRR (2022)
Yiming Li, Qiang Wei, Yujia Zhou, Hua Xu
Fast Textual Corpus Retrieval from Electronic Health Records using PDF Parser and TxtSplit Tools. AMIA (2022)
Yilu Fang, Betina Ross S. Idnay, Yingcheng Sun, Hao Liu, Zhehuan Chen, Karen Marder, Hua Xu, Rebecca Schnall, Chunhua Weng
Combining human and machine intelligence for clinical trial eligibility querying. J. Am. Medical Informatics Assoc. 29 (7) (2022)
Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI (2022)
Hua Xu, David L. Buckeridge, Fei Wang, Peter Tarczy-Hornoch
Novel informatics approaches to COVID-19 Research: From methods to applications. J. Biomed. Informatics 129 (2022)
Avisha Das, Salih Selek, Alia R. Warner, Xu Zuo, Yan Hu, Vipina Kuttichi Keloth, Jianfu Li, W. Jim Zheng, Hua Xu
Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues. BioNLP@ACL (2022)
Qiang Wei, Xu Zuo, Omer Anjum, Yan Hu, Ryan Denlinger, Elmer V. Bernstam, Martin J. Citardi, Hua Xu
ClinicalLayoutLM: A Pre-trained Multi-modal Model for Understanding Scanned Document in Electronic Health Records. Big Data (2022)
Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI (2022)
Andrea H. Ramirez, Lina M. Sulieman, David J. Schlueter, Alese E. Halvorson, Jun Qian, Francis Ratsimbazafy, Roxana Loperena-Cortes, Kelsey R. Mayo, Melissa A. Basford, Nicole Deflaux, Karthik Muthuraman, Karthik Natarajan, Abel N. Kho, Hua Xu, Consuelo H. Wilkins, Hoda Anton-Culver, Eric Boerwinkle, Mine Cicek, Cheryl R. Clark, Elizabeth Cohn, Lucila Ohno-Machado, Sheri D. Schully, Brian K. Ahmedani, Maria Argos, Robert M. Cronin, Christopher J. O'Donnell, Mona Fouad, David B. Goldstein, Philip Greenland, Scott J. Hebbring, Elizabeth W. Karlson, Parinda Khatri, Bruce Korf, Jordan W. Smoller, Stephen Sodeke, John Wilbanks, Justin Hentges, Stephen Mockrin, Christopher Lunt, Stephanie A. Devaney, Kelly Gebo, Joshua C. Denny, Robert J. Carroll, David Glazer, Paul A. Harris, George Hripcsak, Anthony Philippakis, Dan M. Roden
Research Program: Data quality, utility, and diversity. Patterns 3 (8) (2022)
Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang
Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature. J. Biomed. Informatics 131 (2022)
Jianping He, Fang Li, Xinyue Hu, Jianfu Li, Yi Nian, Jingqi Wang, Yang Xiang, Qiang Wei, Hua Xu, Cui Tao
Chemical-Protein Relation Extraction with Pre-trained Prompt Tuning. ICHI (2022)
Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui
Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. AMIA (2022)
Jihoon Kim, Larissa Neumann, Paulina Paul, Michele E. Day, Michael Aratow, Douglas S. Bell, Jason N. Doctor, Ludwig Christian G. Hinske, Xiaoqian Jiang, Katherine K. Kim, Michael E. Matheny, Daniella Meeker, Mark J. Pletcher, Lisa M. Schilling, Spencer L. SooHoo, Hua Xu, Kai Zheng, Lucila Ohno-Machado
Privacy-protecting, reliable response data discovery using COVID-19 patient observations. J. Am. Medical Informatics Assoc. 28 (8) (2021)
Hanlei Zhang, Xiaoteng Li, Hua Xu, Panpan Zhang, Kang Zhao, Kai Gao
TEXTOIR: An Integrated and Visualized Platform for Text Open Intent Recognition. ACL (demo) (2021)
Laila Rasmy, Bijun S. Kannadath, Masayuki Nigo, Ziqian Xie, Bingyu Mao, Khush A. Patel, Yujia Zhou, Xiao Dong, Hua Xu, Degui Zhi
Generalizable Gated Recurrent Neural Network based model to predict COVID-19 patient outcomes on admission. AMIA (2021)
Jingqi Wang, Yuankai Ren, Zhi Zhang, Hua Xu, Yaoyun Zhang
From Tokenization to Self-Supervision: Building a High-Performance Information Extraction System for Chemical Reactions in Patents. Frontiers Res. Metrics Anal. 6 (2021)
Xu Zuo, Yong Chen, Lucila Ohno-Machado, Hua Xu
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles. Briefings Bioinform. 22 (2) (2021)
Yi Guo, Yahan Zhang, Tianchen Lyu, Mattia C. F. Prosperi, Fei Wang, Hua Xu, Jiang Bian
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. J. Am. Medical Informatics Assoc. 28 (9) (2021)
Jianfu Li, Yujia Zhou, Xiaoqian Jiang, Karthik Natarajan, Serguei V. S. Pakhomov, Hongfang Liu, Hua Xu
Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition. J. Am. Medical Informatics Assoc. 28 (10) (2021)
Dalton Schutte, Jake Vasilakes, Anusha Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu, Halil Kilicoglu, Jeffrey R. Bishop, Terrence Adam, Rui Zhang
Discovering novel drug-supplement interactions using a dietary supplements knowledge graph generated from the biomedical literature. CoRR (2021)
Jianfu Li, Qiang Wei, Omid Ghiasvand, Miao Chen, Victor S. Lobanov, Chunhua Weng, Hua Xu
Study of Pre-trained Language Models for Named Entity Recognition in Clinical Trial Eligibility Criteria from Multiple Corpora. ICHI (2021)
Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao
Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Laila Rasmy, Masayuki Nigo, Bijun S. Kannadath, Ziqian Xie, Bingyu Mao, Khush A. Patel, Wanheng Zhang, Yujia Zhou, Angela Ross, Hua Xu, Degui Zhi
CovRNN: predicting outcomes of COVID-19 patients on admission using their electronic health records with minimal data processing. AMIA (2021)
Greg M. Silverman, Raymond L. Finzel, Michael V. Heinz, Jake Vasilakes, Jacob C. Solinsky, Reed McEwan, Benjamin C. Knoll, Christopher J. Tignanelli, Hongfang Liu, Hua Xu, Xiaoqian Jiang, Genevieve B. Melton, Serguei V. S. Pakhomov
An Empirical Study of UMLS Concept Extraction from Clinical Notes using Boolean Combination Ensembles. CoRR (2021)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR (2021)
Kang Zhao, Hua Xu, Yue Cheng, Xiaoteng Li, Kai Gao
Representation iterative fusion based on heterogeneous graph neural network for joint entity and relation extraction. Knowl. Based Syst. 219 (2021)
Jingqi Wang, Noor Abu-El-Rub, Josh Gray, Huy Anh Pham, Yujia Zhou, Frank J. Manion, Mei Liu, Xing Song, Hua Xu, Masoud Rouhizadeh, Yaoyun Zhang
COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model. J. Am. Medical Informatics Assoc. 28 (6) (2021)
Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Xu Zuo, Jianfu Li, Bo Zhao, Yujia Zhou, Xiao Dong, Jon D. Duke, Karthik Natarajan, George Hripcsak, Nigam Shah, Juan M. Banda, Ruth M. Reeves, Hua Xu
Normalizing Clinical Document Titles to LOINC Document Ontology: an Initial Study. AMIA (2020)
Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang
Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics. Health Informatics J. 26 (2) (2020)
Xi Yang, Hanyuan Yang, Tianchen Lyu, Shuang Yang, Yi Guo, Jiang Bian, Hua Xu, Yonghui Wu
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives. ICHI (2020)
Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. BMC Medical Informatics Decis. Mak. (4) (2020)
Yaoyun Zhang, Jingqi Wang, Hua Xu
LANN: An integrated online annotation tool for information extraction. AMIA (2020)
Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu
A study of deep learning approaches for medication and adverse drug event extraction from clinical text. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Hongfang Liu, Xiaoqian Jiang, Serguei V. S. Pakhomov, Chunhua Weng, Hua Xu
The Open Health Natural Language Processing Collaboratory. AMIA (2020)
Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu
Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. 27 (3) (2020)
Laila Rasmy, Firat Tiryaki, Yujia Zhou, Yang Xiang, Cui Tao, Hua Xu, Degui Zhi
Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Rui Duan, Chongliang Luo, Martijn J. Schuemie, Jiayi Tong, C. Jason Liang, Howard H. Chang, Mary Regina Boland, Jiang Bian, Hua Xu, John H. Holmes, Christopher B. Forrest, Sally C. Morton, Jesse A. Berlin, Jason H. Moore, Kevin B. Mahoney, Yong Chen
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. J. Am. Medical Informatics Assoc. 27 (7) (2020)
Jingqi Wang, William Christopher Mathews, Huy Anh Pham, Hua Xu, Yaoyun Zhang
Opioid2FHIR: A system for extracting FHIR-compatible opioid prescriptions from clinical text. BIBM (2020)
Qiong Wang, Zongcheng Ji, Jingqi Wang, Stephen Wu, Weiyan Lin, Wenzhen Li, Li Ke, Guohong Xiao, Qing Jiang, Hua Xu, Yi Zhou
A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes. J. Biomed. Informatics 105 (2020)
Qiang Wei, Yaoyun Zhang, Muhammad Amith, Rebecca Lin, Jenay Lapeyrolerie, Cui Tao, Hua Xu
Recognizing software names in biomedical literature using machine learning. Health Informatics J. 26 (1) (2020)
Qiang Wei, Yujia Zhou, Bo Zhao, Xinyue Hu, Qiaozhu Mei, Cui Tao, Hua Xu
Named Entity Recognition from Table Headers in Randomized Controlled Trial Articles. ICHI (2020)
Jean Louis Raisaro, Francesco Marino, Juan Ramón Troncoso-Pastoriza, Raphaelle Beau-Lejdstrom, Riccardo Bellazzi, Robert Murphy, Elmer V. Bernstam, Henry Wang, Mauro Bucalo, Yong Chen, Assaf Gottlieb, Arif O. Harmanci, Miran Kim, Yejin Kim, Jeffrey G. Klann, Catherine Klersy, Bradley A. Malin, Marie Méan, Fabian Prasser, Luigia Scudeller, Ali Torkamani, Julien Vaucher, Mamta Puppala, Stephen T. C. Wong, Milana Frenkel-Morgenstern, Hua Xu, Baba Maiyaki Musa, Abdulrazaq G. Habib, Trevor Cohen, Adam B. Wilcox, Hamisu M. Salihu, Heidi Sofia, Xiaoqian Jiang, Jean-Pierre Hubaux
SCOR: A secure international informatics infrastructure to investigate COVID-19. J. Am. Medical Informatics Assoc. 27 (11) (2020)
Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao
Ontological representation-oriented term normalization and standardization of the Research Domain Criteria. Health Informatics J. 26 (2) (2020)
Hong Guan, Jianfu Li, Hua Xu, Murthy V. Devarakonda
Robustly Pre-trained Neural Model for Direct Temporal Relation Extraction. CoRR (2020)
Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L. DuVall, Elizabeth Hanchrow, Hongfang Liu, Kristine E. Lynch, Michael E. Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M. Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu
COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. J. Am. Medical Informatics Assoc. 27 (9) (2020)
Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao
An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines. SEPDA@ISWC (2019)
Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. MedInfo (2019)
Zongcheng Ji, Qiang Wei, Hua Xu
BERT-based Ranking for Biomedical Entity Normalization. CoRR (2019)
Yanshan Wang, Hua Xu, Özlem Uzuner
Editorial: The second international workshop on health natural language processing (HealthNLP 2019). BMC Medical Informatics Decis. Mak. (5) (2019)
Jun Xu, Zhiheng Li, Qiang Wei, Yonghui Wu, Yang Xiang, Hee-Jin Lee, Yaoyun Zhang, Stephen Wu, Hua Xu
Applying a deep learning-based sequence labeling approach to detect attributes of medical concepts in clinical text. BMC Medical Informatics Decis. Mak. (5) (2019)
Jingqi Wang, Yaoyun Zhang, Hua Xu
CLAMP-ATR: A deep learning pipeline for attribute recognition of clinical concepts. AMIA (2019)
Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu
Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA (2019)
Yang Xiang, Jun Xu, Yuqi Si, Zhiheng Li, Laila Rasmy, Yujia Zhou, Firat Tiryaki, Fang Li, Yaoyun Zhang, Yonghui Wu, Xiaoqian Jiang, W. Jim Zheng, Degui Zhi, Cui Tao, Hua Xu
Time-sensitive clinical concept embeddings learned from large electronic health records. BMC Medical Informatics Decis. Mak. (2) (2019)
Qiang Wei, Yukun Chen, Mandana Salimi, Joshua C. Denny, Qiaozhu Mei, Thomas A. Lasko, Qingxia Chen, Stephen Wu, Amy Franklin, Trevor Cohen, Hua Xu
Cost-aware active learning for named entity recognition in clinical text. J. Am. Medical Informatics Assoc. 26 (11) (2019)
Yaoyun Zhang, Firat Tiryaki, Min Jiang, Hua Xu
Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison. BMC Medical Informatics Decis. Mak. (3) (2019)
Yuqi Si, Jingqi Wang, Hua Xu, Kirk Roberts
Enhancing Clinical Concept Extraction with Contextual Embedding. CoRR (2019)
Zengjian Liu, Xiaolong Wang, Qingcai Chen, Buzhou Tang, Hua Xu
Temporal indexing of medical entity in Chinese clinical notes. BMC Medical Informatics Decis. Mak. (1) (2019)
Yuqi Si, Jingqi Wang, Hua Xu, Kirk E. Roberts
Enhancing clinical concept extraction with contextual embeddings. J. Am. Medical Informatics Assoc. 26 (11) (2019)

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Hua Xu