Licong Cui

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 70

Top Topics

Quality Assurance

Biomedical Ontologies

Top Venues

BMC Medical Informatics Decis. Mak.

J. Am. Medical Informatics Assoc.

Publications

Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. J. Biomed. Semant. 15 (1) (2024)
Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui
Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. AIME (1) (2024)
Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Paul E. Schulz, Licong Cui
Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements. BMC Medical Informatics Decis. Mak. 24 (3) (2024)
Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao
Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. CoRR (2023)
Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao
Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. WWW (Companion Volume) (2023)
Xubing Hao, Rashmie Abeysinghe, Kirk Roberts, Licong Cui
Logical definition-based identification of potential missing concepts in SNOMED CT. BMC Medical Informatics Decis. Mak. 23 (1) (2023)
Xubing Hao, Xiaojin Li, Guo-Qiang Zhang, Cui Tao, Paul E. Schulz, Licong Cui
An ontology-based approach for harmonization and cross-cohort query of Alzheimer's disease data resources. BMC Medical Informatics Decis. Mak. 23 (1) (2023)
Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui
relations in SNOMED CT. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Xiaojin Li, Yan Huang, Samden D. Lhatoo, Shiqiang Tao, Laura Vilella Bertran, Guo-Qiang Zhang, Licong Cui
A hybrid unsupervised and supervised learning approach for postictal generalized EEG suppression detection. Frontiers Neuroinformatics 16 (2022)
Xiaojin Li, Shiqiang Tao, Samden D. Lhatoo, Licong Cui, Yan Huang, Johnson P. Hampson, Guo-Qiang Zhang
A multimodal clinical data resource for personalized risk assessment of sudden unexpected death in epilepsy. Frontiers Big Data 5 (2022)
Guo-Qiang Zhang, Xiaojin Li, Yan Huang, Licong Cui
Temporal Cohort Logic. AMIA (2022)
Rashmie Abeysinghe, Adam Black, Denys Kaduk, Yupeng Li, Christian Reich, Alexander Davydov, Lixia Yao, Licong Cui
Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method. J. Biomed. Informatics 134 (2022)
Maryamsadat Mohtashamian, Rashmie Abeysinghe, Xubing Hao, Licong Cui
Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology. BIBM (2022)
Rashmie Abeysinghe, Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui
An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations. Briefings Bioinform. 23 (3) (2022)
Muhammad Tuan Amith, Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li, Evan Yu, Cui Tao
Toward a standard formal semantic representation of the model card report. BMC Bioinform. 23 (1) (2022)
Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs. J. Biomed. Semant. 13 (1) (2022)
Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui
A substring replacement approach for identifying missing IS-A relations in SNOMED CT. BIBM (2022)
Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui
Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. AMIA (2022)
Fengbo Zheng, Rashmie Abeysinghe, Licong Cui
Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis. BMC Medical Informatics Decis. Mak. (7) (2021)
Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. AMIA (2021)
Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT. BIBM (2021)
Xiaojin Li, Licong Cui, Fei Wang, Paul E. Schulz, Guo-Qiang Zhang
Identifying Sleep-Related Factors Associated with Cognitive Function in a Hispanics/Latinos Cohort: A Dual Random Forest Approach. AMIA (2021)
Fengbo Zheng, Jay Shi, Licong Cui
A lexical-based approach for exhaustive detection of missing hierarchical IS-A relations in SNOMED CT. AMIA (2020)
Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology. Bioinform. 36 (10) (2020)
Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao
Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. BMC Medical Informatics Decis. Mak. (4) (2020)
Fengbo Zheng, Rashmie Abeysinghe, Nicholas Sioutos, Lori Whiteman, Lyubov Remennik, Licong Cui
Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach. BMC Medical Informatics Decis. Mak. (10) (2020)
Ankur Agrawal, Licong Cui
Quality assurance and enrichment of biological and biomedical ontologies and terminologies. BMC Medical Informatics Decis. Mak. (10) (2020)
Fengbo Zheng, Licong Cui
A Lexical-based Formal Concept Analysis Method to Identify Missing Concepts in the NCI Thesaurus. BIBM (2020)
Xufeng Qu, Yuanyuan Wu, Jinze Liu, Licong Cui
HRV-Spark: Computing Heart Rate Variability Measures Using Apache Spark. BIBM (2020)
Shiqiang Tao, Ningzhou Zeng, Isaac Hands, Joseph Hurt-Mueller, Eric B. Durbin, Licong Cui, Guo-Qiang Zhang
Web-based interactive mapping from data dictionaries to ontologies, with an application to cancer registry. BMC Medical Informatics Decis. Mak. (10) (2020)
Carroll Vance, Yejin Kim, Guo-Qiang Zhang, Samden D. Lhatoo, Shiqiang Tao, Licong Cui, Xiaojin Li, Xiaoqian Jiang
Learning to detect the onset of slow activity after a generalized tonic-clonic seizure. BMC Medical Informatics Decis. Mak. (12) (2020)
Guoqiang Zhang, Shiqiang Tao, Ningzhou Zeng, Licong Cui
Ontologies as nested facet systems for human-data interaction. Semantic Web 11 (1) (2020)
Yejin Kim, Xiaoqian Jiang, Samden D. Lhatoo, Guoqiang Zhang, Shiqiang Tao, Licong Cui, Xiaojin Li, Robert D. Jolly, Luyao Chen, Michael Phan, Cung Ha, Marijane Detranaltes, Jiajie Zhang
A community effort for automatic detection of postictal generalized EEG suppression in epilepsy. BMC Medical Informatics Decis. Mak. (12) (2020)
Fengbo Zheng, Jay Shi, Yuntao Yang, W. Jim Zheng, Licong Cui
A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao
An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines. SEPDA@ISWC (2019)
Yuanyuan Wu, Xiaojin Li, Jinze Liu, Licong Cui
Hadoop-EDF: Large-scale Distributed Processing of Electrophysiological Signal Data in Hadoop MapReduce. BIBM (2019)
Jing Liu, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui
Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature. ICHI (2019)
Rashmie Abeysinghe, Michael A. Brooks, Licong Cui
Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. AMIA (2019)
Yejin Kim, Xiaoqian Jiang, Luyao Chen, Xiaojin Li, Licong Cui
Discriminative Sleep Patterns of Alzheimer's Disease via Tensor Factorization. AMIA (2019)
Yejin Kim, Xiaoqian Jiang, Luyao Chen, Xiaojin Li, Licong Cui
Discriminative Sleep Patterns of Alzheimer's Disease via Tensor Factorization. CoRR (2019)
Xiaojin Li, Yan Huang, Shiqiang Tao, Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang
SeizureBank: A Repository of Analysis-ready Seizure Signal Data. AMIA (2019)
Fengbo Zheng, Rashmie Abeysinghe, Licong Cui
A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus. BIBM (2019)
Qi Sun, Guo-Qiang Zhang, Wei Zhu, Licong Cui
Validating Auto-Suggested Changes for SNOMED CT in Non-Lattice Subgraphs Using Relational Machine Learning. MedInfo (2019)
Muhammad Amith, Licong Cui, Kirk Roberts, Hua Xu, Cui Tao
Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology. BIBM (2019)
Guo-Qiang Zhang, Licong Cui, Remo Mueller, Shiqiang Tao, Matthew Kim, Michael Rueschman, Sara Mariani, Daniel R. Mobley, Susan Redline
The National Sleep Research Resource: Towards a Sleep Data Commons. BCB (2018)
James Geller, Yehoshua Perl, Licong Cui, Guo-Qiang Zhang
Quality assurance of biomedical terminologies and ontologies. J. Biomed. Informatics 86 (2018)
Licong Cui, Guo-Qiang Zhang
A Cross-Cohort Query System for the National Sleep Research Resource (NSRR). AMIA (2018)
Licong Cui, Olivier Bodenreider, Jay Shi, Guo-Qiang Zhang
Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. J. Biomed. Informatics 78 (2018)
Rashmie Abeysinghe, Licong Cui
Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. BMC Medical Informatics Decis. Mak. 18 (S-2) (2018)
Guo-Qiang Zhang, Guangming Xing, Licong Cui
An efficient, large-scale, non-lattice-detection algorithm for exhaustive structural auditing of biomedical ontologies. J. Biomed. Informatics 80 (2018)
Rashmie Abeysinghe, Xufeng Qu, Licong Cui
Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. AMIA (2018)
Guo-Qiang Zhang, Licong Cui, Remo Mueller, Shiqiang Tao, Matthew Kim, Michael Rueschman, Sara Mariani, Daniel R. Mobley, Susan Redline
The National Sleep Research Resource: towards a sleep data commons. J. Am. Medical Informatics Assoc. 25 (10) (2018)
Xiaojin Li, Licong Cui, Shiqiang Tao, Jing Chen, Xiang Zhang, Guo-Qiang Zhang
HyCLASSS: A Hybrid Classifier for Automatic Sleep Stage Scoring. IEEE J. Biomed. Health Informatics 22 (2) (2018)
Licong Cui, Ningzhou Zeng, Matthew Kim, Remo Mueller, Emily R. Hankosky, Susan Redline, Guo-Qiang Zhang
X-search: an open access interface for cross-cohort exploration of the National Sleep Research Resource. BMC Medical Informatics Decis. Mak. 18 (1) (2018)
Fengbo Zheng, Licong Cui
Exploring Deep Learning-based Approaches for Predicting Concept Names in SNOMED CT. BIBM (2018)
Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies. BIBM (2018)
Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui
Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. AMIA (2017)
Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui
Auditing subtype inconsistencies among gene ontology concepts. BIBM (2017)
Guo-Qiang Zhang, Yan Huang, Licong Cui
Can SNOMED CT Changes Be Used as a Surrogate Standard for Evaluating the Performance of Its Auditing Methods? AMIA (2017)
Ningzhou Zeng, Guo-Qiang Zhang, Xiaojin Li, Licong Cui
Evaluation of relational and NoSQL approaches for patient cohort identification from heterogeneous data sources. BIBM (2017)
Shiqiang Tao, Licong Cui, Xi Wu, Guo-Qiang Zhang
Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories. AMIA (2017)
Wei Zhu, Guo-Qiang Zhang, Licong Cui
Spark-MCA: Large-scale, Exhaustive Formal Concept Analysis for Evaluating the Semantic Completeness of SNOMED CT. AMIA (2017)
Xiaojin Li, Licong Cui, Shiqiang Tao, Ningzhou Zeng, Guo-Qiang Zhang
SpindleSphere: A Web-based Platform for Large-scale Sleep Spindle Analysis and Visualization. AMIA (2017)
Licong Cui, Wei Zhu, Shiqiang Tao, James T. Case, Olivier Bodenreider, Guo-Qiang Zhang
Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT. J. Am. Medical Informatics Assoc. 24 (4) (2017)
Rashmie Abeysinghe, Licong Cui
Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource. BIBM (2017)
Shiqiang Tao, Ningzhou Zeng, Xi Wu, Wei Zhu, Xiaojin Li, Licong Cui, Guo-Qiang Zhang
A Data Capture Framework for Large-scale Interventional Studies with Survey Workflow Management. CRI (2017)
Licong Cui, Yan Huang, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang
ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research. AMIA (2016)
Guangming Xing, Guo-Qiang Zhang, Licong Cui
FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies. BioData Min. 9 (2016)
Wei Zhu, Lingyun Luo, Tarun Jain, Rebecca S. Boxer, Licong Cui, Guo-Qiang Zhang
DCDS: A Real-time Data Capture and Personalized Decision Support System for Heart Failure Patients in Skilled Nursing Facilities. AMIA (2016)
Licong Cui, Shiqiang Tao, Guo-Qiang Zhang
Biomedical Ontology Quality Assurance Using a Big Data Approach. ACM Trans. Knowl. Discov. Data 10 (4) (2016)
Guangming Xing, Licong Cui, Guo-Qiang Zhang
FEDRR: Fast, Exhaustive Detection of Redundant Hierarchical Relations in Large Biomedical Ontologies. BDM2I@ISWC (2015)
Licong Cui
COHeRE: Cross-Ontology Hierarchical Relation Examination for Ontology Quality Assurance. AMIA (2015)
Mengmeng Sun, Wei Zhu, Shiqiang Tao, Licong Cui, Guo-Qiang Zhang
COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments. AMIA (2015)
Guo-Qiang Zhang, Wei Zhu, Mengmeng Sun, Shiqiang Tao, Olivier Bodenreider, Licong Cui
MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT. IEEE BigData (2014)
Licong Cui, Rong Xu, Zhihui Luo, Susan Wentz, Kyle Scarberry, Guo-Qiang Zhang
Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis. BMC Medical Informatics Decis. Mak. 14 (2014)
Licong Cui, Satya Sanket Sahoo, Samden D. Lhatoo, Gaurav Garg, Prashant Rai, Alireza Bozorgi, Guo-Qiang Zhang
Complex epilepsy phenotype extraction from narrative clinical discharge summaries. J. Biomed. Informatics 51 (2014)
Satya Sanket Sahoo, Samden D. Lhatoo, Deepak K. Gupta, Licong Cui, Meng Zhao, Catherine P. Jayapandian, Alireza Bozorgi, Guo-Qiang Zhang
Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. J. Am. Medical Informatics Assoc. 21 (1) (2014)
Licong Cui, Shiqiang Tao, Guo-Qiang Zhang
A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS. AMIA (2014)
Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo
MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. AMIA (2014)
Licong Cui, Remo Mueller, Satya Sanket Sahoo, Guo-Qiang Zhang
Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning. ICHI (2013)
Guo-Qiang Zhang, Xiangnan Zhou, Robert Fraser, Licong Cui
Concatenation and Kleene Star on Deterministic finite Automata. QLSC (2012)
Licong Cui, Guo-Qiang Zhang
A generalized non-pumping Lemma for Regular Languages. QLSC (2012)
Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo, Alireza Bozorgi
EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification. AMIA (2012)
Guo-Qiang Zhang, Licong Cui
A set coverage problem. Inf. Process. Lett. 110 (4) (2010)
Licong Cui, Yongming Li, Xiaohong Zhang
Intuitionistic Fuzzy Linguistic Quantifiers Based on Intuitionistic Fuzzy-Valued Fuzzy Measures and integrals. Int. J. Uncertain. Fuzziness Knowl. Based Syst. 17 (3) (2009)
Licong Cui, Yongming Li
Linguistic quantifiers based on Choquet integrals. Int. J. Approx. Reason. 48 (2) (2008)