Olivier Bodenreider

ORCID

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 59

Top Venues

AMIA

MedInfo

J. Am. Medical Informatics Assoc.

CoRR

Publications

Bernal Jimenez Gutierrez, Yuqing Mao, Vinh Nguyen, Kin Wah Fung, Yu Su, Olivier Bodenreider
Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion. CoRR (2023)
Bernal Jimenez Gutierrez, Yuqing Mao, Vinh Nguyen, Kin Wah Fung, Yu Su, Olivier Bodenreider
Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion. EMNLP (Findings) (2023)
Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui
relations in SNOMED CT. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Kin Wah Fung, Julia Xu, Shannon McConnell-Lamptey, Donna Pickett, Olivier Bodenreider
A practical strategy to use the ICD-11 for morbidity coding in the United States without a clinical modification. J. Am. Medical Informatics Assoc. 30 (10) (2023)
Yuqing Mao, Randolph A Miller, Olivier Bodenreider, Vinh Nguyen, Kin Wah Fung
Two complementary AI approaches for predicting UMLS semantic group assignment: heuristic reasoning and deep learning. J. Am. Medical Informatics Assoc. 30 (12) (2023)
Thilini Wijesiriwardene, Vinh Nguyen, Goonmeet Bajaj, Hong Yung Yip, Vishesh Javangula, Yuqing Mao, Kin Wah Fung, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
UBERT: A Novel Language Model for Synonymy Prediction at Scale in the UMLS Metathesaurus. CoRR (2022)
Goonmeet Bajaj, Vinh Nguyen, Thilini Wijesiriwardene, Hong Yung Yip, Vishesh Javangula, Amit P. Sheth, Srinivasan Parthasarathy, Olivier Bodenreider
Evaluating Biomedical Word Embeddings for Vocabulary Alignment at Scale in the UMLS Metathesaurus Using Siamese Networks. Insights@ACL (2022)
Vinh Nguyen, Hong Yung Yip, Goonmeet Bajaj, Thilini Wijesiriwardene, Vishesh Javangula, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
Context-Enriched Learning Models for Aligning Biomedical Vocabularies at Scale in the UMLS Metathesaurus. WWW (2022)
Olivier Bodenreider
Powering Semantic Analysis with Bio-ontologies. WWW (Companion Volume) (2022)
Vinh Nguyen, Olivier Bodenreider
UVA Resources for the Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus. CoRR (2022)
Kin Wah Fung, Julia Xu, Shannon McConnell-Lamptey, Donna Pickett, Olivier Bodenreider
Can ICD-11 Replace ICD-10-CM for Morbidity Coding in the U.S.? AMIA (2021)
Vinh Nguyen, Olivier Bodenreider
Adding an Attention Layer Improves the Performance of a Neural Network Architecture for Synonymy Prediction in the UMLS Metathesaurus. MedInfo (2021)
Goonmeet Bajaj, Vinh Nguyen, Thilini Wijesiriwardene, Hong Yung Yip, Vishesh Javangula, Srinivasan Parthasarathy, Amit P. Sheth, Olivier Bodenreider
Evaluating Biomedical BERT Models for Vocabulary Alignment at Scale in the UMLS Metathesaurus. CoRR (2021)
Vinh Nguyen, Hong Yung Yip, Olivier Bodenreider
Biomedical Vocabulary Alignment at Scale in the UMLS Metathesaurus. WWW (2021)
Julia Xu, Kin Wah Fung, Olivier Bodenreider
Sequential Mapping - A Novel Approach to Map from ICD-10-CM to ICD-11. MedInfo (2021)
Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA (2021)
Kin Wah Fung, Julia Xu, Shannon McConnell-Lamptey, Donna Pickett, Olivier Bodenreider
Feasibility of replacing the ICD-10-CM with the ICD-11 for morbidity coding: A content analysis. J. Am. Medical Informatics Assoc. 28 (11) (2021)
Jake Vasilakes, Anusha Bompelli, Jeffrey R. Bishop, Terrence J. Adam, Olivier Bodenreider, Rui Zhang
Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Tien T. T. Tran, Sy V. Nghiem, Van T. Le, Tho Thanh Quan, Vinh Nguyen, Hong Yung Yip, Olivier Bodenreider
Siamese KG-LSTM: A deep learning model for enriching UMLS Metathesaurus synonymy. KSE (2020)
Kin Wah Fung, Julia Xu, Olivier Bodenreider
The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM. J. Am. Medical Informatics Assoc. 27 (5) (2020)
Soon Jye Kho, Amit P. Sheth, Olivier Bodenreider
Automatic Identification of Individual Drugs in Death Certificates. MedInfo (2019)
Jean Noël Nikiema, Olivier Bodenreider
Comparing the Representation of Medicinal Products in RxNorm and SNOMED CT - Consequences on interoperability. ICBO (2019)
Hong Yung Yip, Vinh Nguyen, Olivier Bodenreider
Construction of UMLS Metathesaurus with Knowledge-Infused Deep Learning. BlockSW/CKG@ISWC (2019)
Jake Vasilakes, Yadan Fan, Rubina F. Rizvi, Anusha Bompelli, Olivier Bodenreider, Rui Zhang
Normalizing Dietary Supplement Product Names Using the RxNorm Model. MedInfo (2019)
Vinh Nguyen, Hong Yung Yip, Harsh Thakkar, Qingliang Li, Evan Bolton, Olivier Bodenreider
Singleton Property Graph: Adding A Semantic Web Abstraction Layer to Graph Databases. BlockSW/CKG@ISWC (2019)
Olivier Bodenreider, Lee B. Peters
Using RxNav for drug analytics - How to interpret obsolete drug identifiers? AMIA (2018)
Licong Cui, Olivier Bodenreider, Jay Shi, Guo-Qiang Zhang
Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs. J. Biomed. Informatics 78 (2018)
Jay Pedersen, Bret J. Gardner, James R. Campbell, Walter S. Campbell, Carol Geary, Lee B. Peters, Olivier Bodenreider, James C. McClay
Historically Comprehensive Medications Metadata for i2b2 Data Warehouses. AMIA (2018)
Olivier Bodenreider, Julie James
The New SNOMED CT International Medicinal Product Model. ICBO (2018)
Lee B. Peters, Richard Rice, Olivier Bodenreider
RxNav-in-a-Box - A locally-installable version of RxNav and related APIs. AMIA (2018)
Lee B. Peters, Thang Nguyen, Olivier Bodenreider
Terminology Status APIs - Mapping Obsolete Codes to Current RxNorm, SNOMED CT, and LOINC Concepts. MedInfo (2017)
Ravi Teja Bhupatiraju, Kin Wah Fung, Olivier Bodenreider
MetaMap Lite in Excel: Biomedical Named-Entity Recognition for Non-Technical Users. MedInfo (2017)
Satyajeet Raje, Olivier Bodenreider
Investigating the Coverage of Diseases across Biomedical Research and Clinical Ontologies. CRI (2017)
Olivier Bodenreider, Lee B. Peters
RxMix - Use of NLM drug APIs by non-programmers. AMIA (2017)
Zhiguo Yu, Thang Nguyen, Ferdinand Dhombres, Todd R. Johnson, Olivier Bodenreider
"Hybrid Topics" - Facilitating the Interpretation of Topics Through the Addition of MeSH Descriptors to Bags of Words. MedInfo (2017)
Rave Harpaz, William DuMouchel, Martijn J. Schuemie, Olivier Bodenreider, Carol Friedman, Eric Horvitz, Anna Ripple, Alfred Sorbello, Ryen W. White, Rainer Winnenburg, Nigam H. Shah
Toward multimodal signal detection of adverse drug reactions. J. Biomed. Informatics 76 (2017)
Scott D. Nelson, Jaqui Parker, Robert Lario, Rainer Winnenburg, Mark S. Erlbaum, Michael J. Lincoln, Olivier Bodenreider
Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT. MedInfo (2017)
Satyajeet Raje, Olivier Bodenreider
Interoperability of Disease Concepts in Clinical and Research Ontologies: Contrasting Coverage and Structure in the Disease Ontology and SNOMED CT. MedInfo (2017)
Ferdinand Dhombres, Olivier Bodenreider
Trends in Fetal Medicine: A 10-Year Bibliometric Analysis of Prenatal Diagnosis. MedInfo (2017)
Lee B. Peters, Olivier Bodenreider
RxNav 2.0 - A web-based, mobile-responsive RxNorm browser. AMIA (2017)
Abhivyakti Sawarkar, Alfred Sorbello, Anna Ripple, Olivier Bodenreider
Detecting Adverse Drug Event Safety Signals from MEDLINE Reports: Challenges in Employing Cross-terminology Mapping of MeSH to MedDRA. AMIA (2017)
Nathan J. Bahr, Scott D. Nelson, Rainer Winnenburg, Olivier Bodenreider
Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. MedInfo (2017)
Kin Wah Fung, Joan Kapusnik-Uner, Jean Cunningham, Stefanie Higby-Baker, Olivier Bodenreider
Comparison of three commercial knowledge bases for detection of drug-drug interactions in clinical decision support. J. Am. Medical Informatics Assoc. 24 (4) (2017)
Licong Cui, Wei Zhu, Shiqiang Tao, James T. Case, Olivier Bodenreider, Guo-Qiang Zhang
Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT. J. Am. Medical Informatics Assoc. 24 (4) (2017)
Satyajeet Raje, Olivier Bodenreider
Identifying Potentially Missing Hierarchical Relations in SNOMED CT based on Lexical Features - Impact of Synonyms and Lexico-syntactic Constraints. AMIA (2017)
Olivier Bodenreider, Lee B. Peters
RxNorm Concept History Service. AMIA (2017)
Fabrício S. P. Kury, Olivier Bodenreider
Mapping U.S. FDA National Drug Codes to Anatomical-Therapeutic-Chemical Classes using RxNorm. AMIA (2017)
Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
The digital revolution in phenotyping. Briefings Bioinform. 17 (5) (2016)
Mark L. Homer, Nathan P. Palmer, Olivier Bodenreider, Aurel Cami, Laura Chadwick, Kenneth D. Mandl
The Drug Data to Knowledge Pipeline: Large-Scale Claims Data Classification for Pharmacologic Insight. CRI (2016)
Ziv Yaniv, Jessica Faruque, Sally Howe, Kathel Dunn, David Sharlip, Andrew Bond, Pablo Perillan, Olivier Bodenreider, Michael J. Ackerman, Terry S. Yoo
The national library of medicine pill image recognition challenge: An initial report. AIPR (2016)
Olivier Bodenreider, Lee B. Peters
Characterizing the semantic composition of the UMLS Metathesaurus over time. AMIA (2016)
Anna Ripple, Alfred Sorbello, Shahrukh Haider, Olivier Bodenreider
PubMed 'Early Alerts': Towards Better Precision of Literature Searching for Pharmacovigilance Information based on an Assessment of Relevance Feedback. AMIA (2016)
Olivier Bodenreider
Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names. ICBO/BioCreative (2016)
Ferdinand Dhombres, Olivier Bodenreider
Interoperability between phenotypes in research and healthcare terminologies - Investigating partial mappings between HPO and SNOMED CT. J. Biomed. Semant. 7 (2016)
Ferdinand Dhombres, Vojtech Huser, Laritza M. Rodriguez, Olivier Bodenreider
Assessing the potential risk in drug prescriptions during pregnancy. AMIA (2016)
Vinh Nguyen, Jyoti Leeka, Olivier Bodenreider, Amit P. Sheth
A Formal Graph Model for RDF and Its Implementation. CoRR (2016)
Olivier Bodenreider, Vojtech Huser, Christian G. Reich
Resources for Analyzing Drug Prescription Datasets. AMIA (2016)
Vojtech Huser, Olivier Bodenreider
Exploring the Use of ClinicalTrials.gov Trial Results Data for Pharmacovigilance. AMIA (2016)
Lee B. Peters, Olivier Bodenreider
NDC Properties in RxNorm. AMIA (2016)
Alfred Sorbello, Anna Ripple, Olivier Bodenreider
PubMed 'Early Alerts': A Pilot Study to Support Prospective Detection of Emerging Adverse Drug Events. AMIA (2015)
Ferdinand Dhombres, Rainer Winnenburg, James T. Case, Olivier Bodenreider
Extending the coverage of phenotypes in SNOMED CT through post-coordination. MedInfo (2015)
Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier
Exposing Provenance Metadata Using Different RDF Models. SWAT4LS (2015)
Thang Nguyen, Lee B. Peters, Olivier Bodenreider
Finding Similar Drug Classes using RxClass. AMIA (2015)
Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth
On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR (2015)
Olivier Bodenreider, Lee B. Peters, Thang Nguyen
Navigating between Drug Classes and RxNorm Drugs with RxClass. AMIA (2015)
Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier
Exposing Provenance Metadata Using Different RDF Models. CoRR (2015)
Lee B. Peters, Olivier Bodenreider
Approaches to Supporting the Analysis of Historical Medication Datasets with RxNorm. AMIA (2015)
Bastien Rance, Thai Le, Olivier Bodenreider
Fingerprinting Biomedical Terminologies - Automatic Classification and Visualization of Biomedical Vocabularies through UMLS Semantic Group Profiles. MedInfo (2015)
Rainer Winnenburg, Jonathan M. Mortensen, Olivier Bodenreider
Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. J. Biomed. Semant. 6 (2015)
Rainer Winnenburg, Alfred Sorbello, Anna Ripple, Rave Harpaz, Joseph M. Tonning, Ana Szarfman, Henry Francis, Olivier Bodenreider
Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. J. Biomed. Informatics 57 (2015)
Lee B. Peters, Nathan J. Bahr, Olivier Bodenreider
Evaluating drug-drug interaction information in NDF-RT and DrugBank. J. Biomed. Semant. 6 (2015)
Rainer Winnenburg, Alfred Sorbello, Olivier Bodenreider
Exploring adverse drug events at the class level. J. Biomed. Semant. 6 (2015)
Delroy Cameron, Ramakanth Kavuluru, Thomas C. Rindflesch, Amit P. Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider
Context-driven automatic subgraph creation for literature-based discovery. J. Biomed. Informatics 54 (2015)
Emir Khatipov, Maureen Madden, Pishing Chiang, Philip Chuang, Duc Nguyen, Ivor D'Souza, Rainer Winnenburg, Olivier Bodenreider, Julia L. Skapik, Robert C. McClure, Steven Emrick
Creating, Maintaining and Publishing Value Sets in the VSAC. AMIA (2014)
Olivier Bodenreider, Lee B. Peters, Thang Nguyen
RxClass - Navigating between Drug Classes and RxNorm Drugs. ICBO (2014)
Guo-Qiang Zhang, Wei Zhu, Mengmeng Sun, Shiqiang Tao, Olivier Bodenreider, Licong Cui
MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT. IEEE BigData (2014)
Laritza Rodriguez, Vojtech Huser, Olivier Bodenreider, James J. Cimino
Automatic coding of Free-Text Medication Data recorded by Research Coordinators. AMIA (2014)
Rachel L. Richesson, Kin Wah Fung, Olivier Bodenreider
Coverage of Rare Disease Names in Clinical Coding Systems and Ontologies and Implications for Electronic Health Records-Based Research. ICBO (2014)
Rainer Winnenburg, Olivier Bodenreider
Desiderata for an authoritative Representation of MeSH in RDF. AMIA (2014)
Rainer Winnenburg, Olivier Bodenreider
A framework for assessing the consistency of drug classes across sources. J. Biomed. Semant. 5 (2014)
Kin Wah Fung, Rachel L. Richesson, Olivier Bodenreider
Coverage of Rare Disease Names in Standard Terminologies and Implications for Patients, Providers, and Research. AMIA (2014)
Thang Nguyen, Lee B. Peters, Olivier Bodenreider
RxClass - Navigating between Drug Classes and RxNorm Drugs. AMIA (2014)
Olivier Bodenreider, Laritza Rodriguez
Analyzing U.S. prescription lists with RxNorm and the ATC/DDD Index. AMIA (2014)
Vinh Nguyen, Olivier Bodenreider, Amit P. Sheth
Don't like RDF reification?: making statements about statements using singleton property. WWW (2014)
Johann Stan, Olivier Bodenreider, Kin Wah Fung, Dina Demner-Fushman
Facilitating Reconciliation of Inter-Annotator Disagreements. AMIA (2014)
Rainer Winnenburg, Olivier Bodenreider
Metrics for assessing the quality of value sets in clinical quality measures. AMIA (2013)
Bastien Rance, Michelle Snyder, Janine Lewis, Olivier Bodenreider
Leveraging Terminological Resources for Mapping between Rare Disease Information Sources. MedInfo (2013)
Thai Le, Bastien Rance, Olivier Bodenreider
Network Visualization of UMLS Source Vocabularies using Semantic Groups. AMIA (2013)
Lee B. Peters, Thang Nguyen, Olivier Bodenreider
Displaying Drug Classes in RxNav. AMIA (2013)
Lee B. Peters, Jonathan Mortensen, Thang Nguyen, Olivier Bodenreider
Enabling Complex Queries to Drug Information Sources through Functional Composition. MedInfo (2013)
Olivier Bodenreider
Multi-lingual Features of the Unified Medical Language System. CLEF (Working Notes) (2013)
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit P. Sheth, Thomas C. Rindflesch
A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. J. Biomed. Informatics 46 (2) (2013)
Rainer Winnenburg, Laritza Rodriguez, Fiona M. Callaghan, Alfred Sorbello, Ana Szarfman, Olivier Bodenreider
Aligning Pharmacologic Classes Between MeSH and ATC. VDOS+DO@ICBO (2013)
Rainer Winnenburg, Olivier Bodenreider
Exploring Pharmacoepidemiologic Groupings of Drugs from a Clinical Perspective. MedInfo (2013)
Steven Emrick, Duc Nguyen, Pishing Chiang, Philip Chuang, Maureen Madden, Rainer Winnenburg, Robert C. McClure, Ivor D'Souza, Olivier Bodenreider
The NLM Value Set Authority Center at 1 year. AMIA (2013)
Olivier Bodenreider, Duc Nguyen, Pishing Chiang, Philip Chuang, Maureen Madden, Rainer Winnenburg, Robert C. McClure, Steven Emrick, Ivor D'Souza
The NLM Value Set Authority Center. MedInfo (2013)
László Balkányi, Stefan Schulz, Ronald Cornet, Olivier Bodenreider
Medical Concept Representation: The Years Beyond 2000. MedInfo (2013)
Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider
A mutation-centric approach to identifying pharmacogenomic relations in text. J. Biomed. Informatics 45 (5) (2012)
Rainer Winnenburg, Olivier Bodenreider
Issues in Creating and Maintaining Value Sets for Clinical Quality Measures. AMIA (2012)
Tomasz Adamusiak, Olivier Bodenreider
Quality Assurance in LOINC using Description Logic. AMIA (2012)

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Publication Activity (10 Years)

Top Topics

Top Venues

Olivier Bodenreider