Thomas C. Rindflesch

Publication Activity (10 Years)

Years Active: 1986-2018
Publications (10 Years): 15

Top Venues

AMIA

J. Biomed. Informatics

BMC Bioinform.

J. Biomed. Semant.

Publications

Thomas C. Rindflesch, Catherine Blake, Michael J. Cairelli, Marcelo Fiszman, Caroline J. Zeiss, Halil Kilicoglu
Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing. J. Biomed. Semant. 9 (1) (2018)
Catherine Blake, Thomas C. Rindflesch
Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases. J. Biomed. Informatics 72 (2017)
Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Evolution of Research Topics in MEDLINE. AMIA (2017)
Terri Elizabeth Workman, Marcelo Fiszman, Michael J. Cairelli, Diane Nahl, Thomas C. Rindflesch
Spark, an application based on Serendipitous Knowledge Discovery. J. Biomed. Informatics 60 (2016)
Halil Kilicoglu, Graciela Rosemblat, Marcelo Fiszman, Thomas C. Rindflesch
Sortal anaphora resolution to enhance relation extraction from biomedical literature. BMC Bioinform. 17 (2016)
Dimitar Hristovski, Andrej Kastrin, Dejan Dinevski, Anita Burgun, Lovro Ziberna, Thomas C. Rindflesch
Using Literature-Based Discovery to Explain Adverse Drug Effects. J. Medical Syst. 40 (8) (2016)
Dimitar Hristovski, Andrej Kastrin, Thomas C. Rindflesch
Implementing Semantics-Based Cross-domain Collaboration Recommendation in Biomedicine with a Graph Database. AMIA (2016)
Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Evolution of MEDLINE bibliographic database: Preliminary results. ASONAM (2016)
Terri Elizabeth Workman, Charlene R. Weir, Thomas C. Rindflesch
Differentiating Sense through Semantic Interaction Data. AMIA (2016)
Dimitar Hristovski, Andrej Kastrin, Thomas C. Rindflesch
Semantics-Based Cross-domain Collaboration Recommendation in the Life Sciences: Preliminary Results. ASONAM (2015)
Dimitar Hristovski, Dejan Dinevski, Andrej Kastrin, Thomas C. Rindflesch
Biomedical question answering using semantic relations. BMC Bioinform. 16 (2015)
Delroy Cameron, Ramakanth Kavuluru, Thomas C. Rindflesch, Amit P. Sheth, Krishnaprasad Thirunarayan, Olivier Bodenreider
Context-driven automatic subgraph creation for literature-based discovery. J. Biomed. Informatics 54 (2015)
Andrej Kastrin, Thomas C. Rindflesch, Dejan Dinevski, Dimitar Hristovski
Exploiting Semantic Predications in a Graph Database. MIE (2015)
Dimitar Hristovski, Andrej Kastrin, Dejan Dinevski, Thomas C. Rindflesch
Constructing a Graph Database for Semantic Literature-Based Discovery. MedInfo (2015)
Michael J. Cairelli, Marcelo Fiszman, Han Zhang, Thomas C. Rindflesch
Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury. J. Biomed. Semant. 6 (2015)
Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery. Discovery Science (2014)
Guocai Chen, Michael J. Cairelli, Halil Kilicoglu, Dongwook Shin, Thomas C. Rindflesch
Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference. PLoS Comput. Biol. 10 (6) (2014)
Gondy Leroy, Hsinchun Chen, Thomas C. Rindflesch
Smart and Connected Health [Guest editors' introduction]. IEEE Intell. Syst. 29 (3) (2014)
Trevor Cohen, Dominic Widdows, Thomas C. Rindflesch
Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search. QI (2014)
Adam Culbertson, Marcelo Fiszman, Dongwook Shin, Thomas C. Rindflesch
Semantic Processing to Identify Adverse Drug Event Information from Black Box Warnings. AMIA (2014)
Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen
Identifying plausible adverse drug reactions using knowledge extracted from the literature. J. Biomed. Informatics 52 (2014)
Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Link Prediction in a MeSH Co-occurrence Network: Preliminary Results. MIE (2014)
Rui Zhang, Michael J. Cairelli, Marcelo Fiszman, Graciela Rosemblat, Halil Kilicoglu, Thomas C. Rindflesch, Serguei V. S. Pakhomov, Genevieve B. Melton
Using semantic predications to uncover drug-drug interactions in clinical data. J. Biomed. Informatics 49 (2014)
Ning Shang, Hua Xu, Thomas C. Rindflesch, Trevor Cohen
Identifying Plausible Adverse Drug Reactions Using Knowledge Extracted from the Literature. AMIA (2014)
Terri Elizabeth Workman, Marcelo Fiszman, Thomas C. Rindflesch, Diane Nahl
Framing serendipitous information-seeking behavior for facilitating literature-based discovery: A proposed model. J. Assoc. Inf. Sci. Technol. 65 (3) (2014)
Adam Culbertson, Marcelo Fiszman, Dongwook Shin, Thomas C. Rindflesch
Semantic Processing to Identify Adverse Drug Event Information from Black Box Warnings. AMIA (2013)
Dimitar Hristovski, Anita Burgun-Parenthoine, Paul Avillach, Thomas C. Rindflesch
Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. AMIA (2013)
Graciela Rosemblat, Dongwook Shin, Halil Kilicoglu, Charles Sneiderman, Thomas C. Rindflesch
A methodology for extending domain coverage in SemRep. J. Biomed. Informatics 46 (6) (2013)
Terri Elizabeth Workman, Graciela Rosemblat, Marcelo Fiszman, Thomas C. Rindflesch
A Literature-Based Assessment of Concept Pairs as a Measure of Semantic Relatedness. AMIA (2013)
Carol Friedman, Thomas C. Rindflesch, Milton Corn
Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine. J. Biomed. Informatics 46 (5) (2013)
Delroy Cameron, Olivier Bodenreider, Hima Yalamanchili, Tu Danh, Sreeram Vallabhaneni, Krishnaprasad Thirunarayan, Amit P. Sheth, Thomas C. Rindflesch
A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. J. Biomed. Informatics 46 (2) (2013)
Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker, Qing Zeng-Treitler
Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods. HICSS (2013)
Graciela Rosemblat, Melissa P. Resnick, Ione Auston, Dongwook Shin, Charles Sneiderman, Marcelo Fiszman, Thomas C. Rindflesch
Extending SemRep to the public health domain. J. Assoc. Inf. Sci. Technol. 64 (10) (2013)
Michael J. Cairelli, Christopher M. Miller, Marcelo Fiszman, Terri Elizabeth Workman, Thomas C. Rindflesch
Semantic MEDLINE for Discovery Browsing: Using Semantic Predications and the Literature-Based Discovery Paradigm to Elucidate a Mechanism for the Obesity Paradox. AMIA (2013)
Han Zhang, Marcelo Fiszman, Dongwook Shin, Bartlomiej Wilkowski, Thomas C. Rindflesch
Clustering cliques for graph-based summarization of the biomedical research literature. BMC Bioinform. 14 (2013)
Halil Kilicoglu, Dongwook Shin, Marcelo Fiszman, Graciela Rosemblat, Thomas C. Rindflesch
SemMedDB: a PubMed-scale repository of biomedical semantic predications. Bioinform. 28 (23) (2012)
Duy Duc An Bui, Doug Redd, Thomas C. Rindflesch, Qing Zeng-Treitler
An Ensemble Approach for Expanding Queries. TREC (2012)
Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
Discovery at a distance: Farther journeys in predication space. BIBM Workshops (2012)
Trevor Cohen, Dominic Widdows, Lance De Vine, Roger W. Schvaneveldt, Thomas C. Rindflesch
Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies. QI (2012)
Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Peter Davies, Thomas C. Rindflesch
Discovering discovery patterns with predication-based Semantic Indexing. J. Biomed. Informatics 45 (6) (2012)
Ying Liu, Robert Bill, Marcelo Fiszman, Thomas C. Rindflesch, Ted Pedersen, Genevieve B. Melton, Serguei V. S. Pakhomov
Using SemRep to Label Semantic Relations Extracted from Clinical Text. AMIA (2012)
J. Caleb Goodwin, Trevor Cohen, Thomas C. Rindflesch
Discovery by scent: Discovery browsing system based on the Information Foraging Theory. BIBM Workshops (2012)
Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch
Using Literature-based Discovery to Explain Drug Adverse Effects. AMIA (2012)
Qing T. Zeng, Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker
Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. AMIA (2012)
Halil Kilicoglu, Graciela Rosemblat, Marcelo Fiszman, Thomas C. Rindflesch
Constructing a semantic predication gold standard from the biomedical literature. BMC Bioinform. 12 (2011)
Han Zhang, Marcelo Fiszman, Dongwook Shin, Christopher M. Miller, Graciela Rosemblat, Thomas C. Rindflesch
Degree centrality for semantic abstraction summarization of therapeutic studies. J. Biomed. Informatics 44 (5) (2011)
Thomas C. Rindflesch, Halil Kilicoglu, Marcelo Fiszman, Graciela Rosemblat, Dongwook Shin
Semantic MEDLINE: An advanced information management application for biomedicine. Inf. Serv. Use 31 (1-2) (2011)
Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space. QI (2011)
Alla Keselman, Graciela Rosemblat, Halil Kilicoglu, Marcelo Fiszman, Honglan Jin, Dongwook Shin, Thomas C. Rindflesch
Adapting semantic natural language processing technology to address information overload in influenza epidemic management. J. Assoc. Inf. Sci. Technol. 61 (12) (2010)
Halil Kilicoglu, Marcelo Fiszman, Graciela Rosemblat, Sean Marimpietri, Thomas C. Rindflesch
Arguments of Nominals in Semantic Interpretation of Biomedical Text. BioNLP@ACL (2010)
Trevor Cohen, Dominic Widdows, Roger W. Schvaneveldt, Thomas C. Rindflesch
Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes (2010)
Marcelo Fiszman, Bruce E. Bray, Dongwook Shin, Halil Kilicoglu, Glen C. Bennett, Olivier Bodenreider, Thomas C. Rindflesch
Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development. MedInfo (2010)
Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch
Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. J. Biomed. Informatics 42 (5) (2009)
Trevor Cohen, Roger W. Schvaneveldt, Thomas C. Rindflesch
Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. AMIA (2009)
Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch
Semantic Relations for Interpreting DNA Microarray Data. AMIA (2009)
Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes
Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. J. Am. Medical Informatics Assoc. 16 (1) (2009)
Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch
Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. BioLINK@ISMB/ECCB (2008)
Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch, Nancy L. Wilczynski, R. Brian Haynes
Toward Automatic Recognition of High Quality Clinical Evidence. AMIA (2008)
Marcelo Fiszman, Eduardo Ortiz, Bruce E. Bray, Thomas C. Rindflesch
Semantic Processing to Support Clinical Guideline Development. AMIA (2008)
Gondy Leroy, Marcelo Fiszman, Thomas C. Rindflesch
The Impact of Directionality in Predications on Text Mining. HICSS (2008)
Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, Thomas C. Rindflesch, Alan R. Aronson
Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature. Pacific Symposium on Biocomputing (2007)
Caroline B. Ahlers, Dimitar Hristovski, Halil Kilicoglu, Thomas C. Rindflesch
Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms. AMIA (2007)
Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Thomas C. Rindflesch
Extracting Semantic Predications from Medline Citations for Pharmacogenomics. Pacific Symposium on Biocomputing (2007)
Marcelo Fiszman, Graciela Rosemblat, Caroline B. Ahlers, Thomas C. Rindflesch
Identifying Risk Factors for Metabolic Syndrome in Biomedical Text. AMIA (2007)
Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Nicholas C. Ide, Thomas C. Rindflesch
Research Paper: Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE. J. Am. Medical Informatics Assoc. 14 (6) (2007)
Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Philip Goetz, Thomas C. Rindflesch
Interpreting comparative constructions in biomedical text. BioNLP@ACL (2007)
John F. Hurdle, Jeffery R. Botkin, Thomas C. Rindflesch
Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science. AMIA (2007)
Lawrence H. Smith, Thomas C. Rindflesch, W. John Wilbur
The importance of the lexicon in tagging biological text. Nat. Lang. Eng. 12 (4) (2006)
Dimitar Hristovski, Carol Friedman, Thomas C. Rindflesch, Borut Peterlin
Exploiting Semantic Relations for Literature-Based Discovery. AMIA (2006)
Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch
Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. J. Assoc. Inf. Sci. Technol. 57 (1) (2006)
Laura A. Slaughter, Dagobert Soergel, Thomas C. Rindflesch
Semantic representation of consumer questions and physician answers. Int. J. Medical Informatics 75 (7) (2006)
Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Graciela Rosemblat, François-Michel Lang, Daphne Norwood, Thomas C. Rindflesch
Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. AMIA (2006)
Marco Masseroli, Halil Kilicoglu, François-Michel Lang, Thomas C. Rindflesch
Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease. BMC Bioinform. 7 (2006)
Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu
Summarizing Drug Information in Medline Citations. AMIA (2006)
Charles Sneiderman, Dina Demner-Fushman, Marcelo Fiszman, Thomas C. Rindflesch
Semantic characteristics of MEDLINE citations useful for therapeutic decision-making. AMIA (2005)
Powell J. Bernhardt, Susanne M. Humphrey, Thomas C. Rindflesch
Determining Prominent Subdomains in Medicine. AMIA (2005)
Gondy Leroy, Thomas C. Rindflesch
Effects of information and machine learning algorithms on word sense disambiguation with small datasets. Int. J. Medical Informatics 74 (7-8) (2005)
Thomas C. Rindflesch, Serguei Pakhomov, Marcelo Fiszman, Halil Kilicoglu, Vincent R. Sánchez
Medical Facts to Support Inferencing in Natural Language Processing. AMIA (2005)
Lawrence H. Smith, Lorraine K. Tanabe, Thomas C. Rindflesch, W. John Wilbur
MedTag: A Collection of Biomedical Annotations. LBLODMBS@IDMB (2005)
Gondy Leroy, Thomas C. Rindflesch
Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naïve Bayes Classifier. MedInfo (2004)
Wendy W. Chapman, Marcelo Fiszman, John N. Dowling, Brian E. Chapman, Thomas C. Rindflesch
Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap. MedInfo (2004)
Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu
Summarization of an Online Medical Encyclopedia. MedInfo (2004)
Lawrence H. Smith, Thomas C. Rindflesch, W. John Wilbur
MedPost: a part-of-speech tagger for bioMedical text. Bioinform. 20 (14) (2004)
Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu
Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts. AMIA (2003)
Vipul Kashyap, Cartic Ramakrishnan, Thomas C. Rindflesch
Towards (Semi-)automatic Generation of Bio-medical ontologies. AMIA (2003)
Thomas C. Rindflesch, Marcelo Fiszman
The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J. Biomed. Informatics 36 (6) (2003)
Marcelo Fiszman, Thomas C. Rindflesch, Halil Kilicoglu
Interpreting Hypernymic Propositions in an Online Medical Encyclopedia. AMIA (2003)
Thomas C. Rindflesch, Bisharah Libbus, Dimitar Hristovski, Alan R. Aronson, Halil Kilicoglu
Semantic Relations Asserting the Etiology of Genetic Diseases. AMIA (2003)
Olivier Bodenreider, Anita Burgun, Thomas C. Rindflesch
Assessing the consistency of a biomedical terminology through lexical knowledge. Int. J. Medical Informatics 67 (1-3) (2002)
Bisharah Libbus, Thomas C. Rindflesch
NLP-based information extraction for managing the molecular biology literature. AMIA (2002)
Indra Neil Sarkar, Thomas C. Rindflesch
Discovering protein similarity using natural language processing. AMIA (2002)
Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork
Finding UMLS Metathesaurus concepts in MEDLINE. AMIA (2002)
Padmini Srinivasan, Thomas C. Rindflesch
Exploring text mining from MEDLINE. AMIA (2002)
Olivier Bodenreider, Thomas C. Rindflesch, Anita Burgun
Unsupervised, corpus-based method for extending a biomedical terminology. ACL Workshop on Natural Language Processing in the Biomedical Domain (2002)
Thomas C. Rindflesch, Jayant V. Rajan, Lawrence Hunter
Extracting Molecular Binding Relationships from Biomedical Text. ANLP (2000)
Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur
The NLM Indexing Initiative. AMIA (2000)
Thomas C. Rindflesch, Carol A. Bean, Charles Sneiderman
Argument identification for arterial branching predications asserted in cardiac catheterization reports. AMIA (2000)
Thomas C. Rindflesch, Lawrence Hunter, Alan R. Aronson
Mining molecular binding terminology from biomedical text. AMIA (1999)
Carol A. Bean, C. R. Selden, Thomas C. Rindflesch, Alan R. Aronson
From Bibliography to Test Collection: Enhancing Topical Relevance Assessment for Bibliographic Information Retrieval System Evaluation. AMIA (1999)
Lawrence W. Wright, Holly K. Grossetta Nardini, Alan R. Aronson, Thomas C. Rindflesch
Hierarchical Concept Indexing of Full-Text Documents in the Unified Medical Language System® Information Sources Map. J. Am. Soc. Inf. Sci. 50 (6) (1999)

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Publication Activity (10 Years)

Top Topics

Top Venues

Thomas C. Rindflesch