Jonathan R. Nebeker

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 30

Top Topics

Electronic Health Records

Top Venues

J. Biomed. Informatics

J. Am. Medical Informatics Assoc.

Publications

Everett Neil Rush, Ozgur Ozmen, Minsu Kim, Erin Rush Ortegon, Makoto Jones, Byung H. Park, Steven Pizer, Jodie Trafton, Lisa A. Brenner, Merry Ward, Jonathan R. Nebeker
A framework for inferring and analyzing pharmacotherapy treatment patterns. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Merry Ward, Jonathan R. Nebeker
EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records. J. Biomed. Informatics 150 (2024)
Hilda B. Klasky, Özgür Özmen, Olufemi A. Omitaomu, Mohammed M. Olama, Merry Ward, Angela Laurio, Jonathan R. Nebeker
Towards a Comparative Assessment of Data-Driven Process Models in Health Information Technology. ICHI (2023)
Junghoon Chae, Byung H. Park, Minsu Kim, Everett Neil Rush, Özgür Özmen, Makoto Jones, Merry Ward, Jonathan R. Nebeker
CPViz: Visualizing clinical pathways represented in higher-order networks. Visualization and Data Analysis (2023)
Sandra Mitchell, Gay Stahr, Todd Turner, Jeffery Anderson, Jonathan R. Nebeker
Collaborative High Reliability Organization (HRO) Initiative in the Veterans Health Information Exchange (VHIE) Program. AMIA (2022)
Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
Detecting anomalous sequences in electronic health records using higher-order tensor networks. J. Biomed. Informatics 135 (2022)
Laura Pullum, Olufemi A. Omitaomu, Mohammed M. Olama, Addi Thakur Malviya, Ozgur Ozmer, Hilda B. Klasky, P. Teja Kuruganti, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker
A Systematic Review of Healthcare Information Technology Anomaly Classification. ICHI (2022)
Zackary Falls, Steven H. Brown, Naveed Shah, Frank LeHouillier, Randeep Badwal, Kendria Hall, Gillian Franklin, William H. Kelly, Andrew Holdaway, Diane Montella, Linda Wedemeyer, Sarita Keni, Eric Rose, Jonathan R. Nebeker, Peter L. Elkin
CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. MIE (2022)
Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Addi Thakur Malviya, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker
Use of Event-Time Embeddings via RNN to Discern Novel Event Sequences in EHRs. ICHI (2022)
Byung H. Park, Sangkeun Lee, Özgür Özmen, Mohit Kumar, Merry Ward, Jonathan R. Nebeker
Real-time Multi-granular Analytics Framework for HIT Systems. Big Data (2022)
S. M. Shamimul Hasan, Minsu Kim, Byung Hoon Park, Makoto M. Jones, Merry Ward, Jonathan R. Nebeker
A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters. BHI (2021)
Mark S. Pfaff, Ozgur Eris, Charlene R. Weir, Amanda Anganes, Tina Crotty, Mohammad Rahman, Merry Ward, Jonathan R. Nebeker
Analysis of the cognitive demands of electronic health record use. J. Biomed. Informatics 113 (2021)
Olufemi A. Omitaomu, Hilda B. Klasky, Mohammed M. Olama, Özgür Özmen, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
A new methodological framework for hazard detection models in health information technology systems. J. Biomed. Informatics 124 (2021)
Haoran Niu, Olufemi A. Omitaomu, Qing C. Cao, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
Adaptive Anomaly Detection for Dynamic Clinical Event Sequences. IEEE BigData (2020)
Everett Neil Rush, Özgür Özmen, Kathryn Knight, Byung Park, Clifton Baker, Makoto Jones, Merry Ward, Jonathan R. Nebeker
Characterizing Sub-Cohorts via Data Normalization and Representation Learning. CBMS (2020)
Junghoon Chae, Byung Hoon Park, Makoto Jones, Merry Ward, Jonathan R. Nebeker
Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic Heart Disease. CBMS (2020)
Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Merry Ward, Jeanie M. Scott, Angela Laurio, Jonathan R. Nebeker
Topic Modeling to Discern Irregular Order Patterns in Unlabeled Electronic Health Records. BHI (2019)
Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker
A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI). MedInfo (2019)
Steven H. Brown, Loren Stevenson, Daniel Territo, Jonathan R. Nebeker, Michael J. Lincoln, John Kilbourne, Holly Miller
One-Way and Round-Trip Analysis Demonstrates Surprising Limitations of Standards-Based Terminology Maps. AMIA (2019)
Margaret Donahue, Omar Bouhaddou, Nelson Hsing, Todd Turner, Glen Crandall, Joseph R. Nelson, Jonathan R. Nebeker
Veterans Health Information Exchange: Successes and Challenges of Nationwide Interoperability. AMIA (2018)
Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker
The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI). AMIA (2018)
John D. D'Amore, Omar Bouhaddou, Sandra Mitchell, Chun Li, Russell Leftwich, Todd Turner, Matthew Rahn, Margaret Donahue, Jonathan R. Nebeker
Interoperability Progress and Remaining Data Quality Barriers of Certified Health Information Technologies. AMIA (2018)
Omar Bouhaddou, Nelson Hsing, Nitin Jain, Jim Malpass, Margaret Donahue, Jonathan R. Nebeker
On-Demand Health Information Exchange Strategy: Estimating the Amount of Duplicate Documents Sent and Received. AMIA (2018)
Kenneth S. Boockvar, William Ho, Jennifer Pruskowski, Katherine E. DiPalo, Jane J. Wong, Jessica Patel, Jonathan R. Nebeker, Rainu Kaushal, William Hung
Effect of health information exchange on recognition of medication discrepancies is interrupted when data charges are introduced: results of a cluster-randomized controlled trial. J. Am. Medical Informatics Assoc. 24 (6) (2017)
Omar Bouhaddou, Mike Davis, Margaret Donahue, Anthony Mallia, Stephania Griffin, Jennifer Teal, Jonathan R. Nebeker
Automated Detection of Privacy Sensitive Conditions in C-CDAs: Security Labeling Services at the Department of Veterans Affairs. AMIA (2016)
Jonathan R. Nebeker, Shane McNamee, David Douglas, James L. Hellewell, Kristian Johnson, Jessica Murphy, Ron Moody, Charlene R. Weir
VA's New Electronic Health Management Platform (eHMP): Novel Features for Activity Management and Notifications. AMIA (2016)
Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny
Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. AMIA (2015)
Adi V. Gundlapalli, Doug Redd, Bryan Smith Gibson, Marjorie Carter, Chris Korhonen, Jonathan R. Nebeker, Matthew H. Samore, Qing Zeng-Treitler
Maximizing clinical cohort size using free text queries. Comput. Biol. Medicine 60 (2015)
Jonathan R. Nebeker, Walter P. Nichol, Shane McNamee, Jessica Murphy, James L. Hellewell, Reese Omizo, Kristian Johnson, Margaret V. McDonald, Kensaku Kawamoto, Guilherme Del Fiol, Emory Fry, Elaine Hunolt, Theresa Cullen, Scott D. Wood, Jennifer Herout, Charlene R. Weir
Electronic Health Management Platform (eHMP): The Next Phase of VA's EHR. AMIA (2015)
Mark S. Pfaff, Ozgur Eris, Amanda Anganes, Tina Crotty, Jonathan R. Nebeker, Merry Ward
Uncovering the Cognitive Demands of EHR Use via Task Analysis. AMIA (2015)
Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker
Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. J. Am. Medical Informatics Assoc. 21 (4) (2014)
Charlene R. Weir, Bryan Smith Gibson, Alan H. Morris, Jorie Butler, Matthew H. Samore, Jonathan R. Nebeker
Considerations of Dual Process Theories for EHR Design. AMIA (2014)
Guy Divita, Qing T. Zeng, Adi V. Gundlapalli, Scott L. DuVall, Jonathan R. Nebeker, Matthew H. Samore
Sophia: An Expedient UMLS Concept Extraction Annotator. AMIA (2014)
Jonathan R. Nebeker, Charlene R. Weir, James L. Hellewell, Molly Leecaster, Frank Drews, Robyn Barrus, Daniel Bolton, Gopi Penmetsa, Amelia E. Underwood
Integrating Information Objects and Annotations in the Notional DoD-VA iEHR User Experience: Results from a randomized controlled trial on efficiency and accuracy of problem assessment and intervention specification. AMIA (2013)
Charlene R. Weir, Frank Drews, Jorie Butler, Makoto L. Jones, Robyn Barrus, Jonathan R. Nebeker
Support For Contextual Control In Primary Care: A Qualitative Analysis. AMIA (2013)
Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker, Qing Zeng-Treitler
Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods. HICSS (2013)
Leslie Lenert, Farrant Sakaguchi, Robert Dunlea, Kurt Barsch, Jonathan R. Nebeker, Caroline Milne
Effects of Electronic Health Records Systems on the Exam-Room Communication Skills of Resident Physicians. AMIA (2013)
Charlene R. Weir, Frank Drews, Molly Leecaster, Robyn Barrus, Jonathan R. Nebeker
The Orderly and Effective Visit: Impact of the Electronic Health Record on Modes of Cognitive Control. AMIA (2012)
Qing T. Zeng, Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker
Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. AMIA (2012)
Tyler Forbush, Brad Adams, Shuying Shen, Brett R. South, Jonathan R. Nebeker, Scott L. DuVall
CASPR: Friendly Annotation Management. AMIA (2012)
Scott L. DuVall, Keith W. Boone, Adi V. Gundlapalli, Brett R. South, Shuying Shen, Jonathan R. Nebeker, Leonard W. D'Avolio, Matthew H. Samore
Creating Reusable Annotated Corpora with the Clinical Document Architecture. HICSS (2011)
André Kushniruk, Susan L. Santos, George Pourakis, Jonathan R. Nebeker, Kenneth S. Boockvar
Cognitive Analysis of a Medication Reconciliation Tool: Applying Laboratory and Naturalistic Approaches to System Evaluation. ITCH (2011)
Christopher H. O. Olola, Scott P. Narus, Jonathan R. Nebeker, Mollie R. Poynton, Joseph Hales, Belle Rowan, Heather LeSieur, Cynthia Zumbrennen, Annemarie A. Edwards, Robert Crawford, Spencer Amundsen, Yasmin Kabir, Joseph Atkin, Cynthia Newberry, Jason Young, Tariq Hanifi, Ben Risenmay, Tyler Sorensen, R. Scott Evans
The perception of medical professionals and medical students on the usefulness of an emergency medical card and a continuity of care report in enhancing continuity of care. Int. J. Medical Informatics 80 (6) (2011)
Hillary J. Mull, Jonathan R. Nebeker
Informatics Tools for the Development of Action-Oriented Triggers for Outpatient Adverse Drug Events. AMIA (2008)
Charlene R. Weir, Jonathan R. Nebeker
Critical Issues in an Electronic Documentation System. AMIA (2007)
Charlene R. Weir, Jonathan R. Nebeker, Bret L. Hicken, Rebecca Campo, Frank Drews, Beth LeBar
Research Paper: A Cognitive Task Analysis of Information Management Strategies in a Computerized Provider Order Entry Environment. J. Am. Medical Informatics Assoc. 14 (1) (2007)
John F. Hurdle, Charlene R. Weir, Beverly Roth, Jennifer M. Hoffman, Jonathan R. Nebeker
Critical Gaps in the World's Largest Electronic Medical Record: Ad Hoc Nursing Narratives and Invisible Adverse Drug Events. AMIA (2003)
Jonathan R. Nebeker, John F. Hurdle, Jennifer M. Hoffman, Beverly Roth, Charlene R. Weir, Matthew H. Samore
Developing a Taxonomy for Research in Adverse Drug Events: Potholes and Signposts. J. Am. Medical Informatics Assoc. 9 (Supplement) (2002)
Jonathan R. Nebeker, John F. Hurdle, Jennifer M. Hoffman, Beverly Roth, Charlene R. Weir, Matthew H. Samore
Developing a taxonomy for research in adverse drug events: potholes and signposts. AMIA (2001)