Discovering protein similarity using natural language processing.
Indra Neil SarkarThomas C. RindfleschPublished in: AMIA (2002)
Keyphrases
- natural language processing
- protein structure alignment
- machine learning
- information extraction
- similarity measure
- knowledge representation
- text processing
- natural language
- text mining
- distance measure
- sequence similarity
- semantic analysis
- computational linguistics
- text summarization
- free text
- sequence alignment
- ontology learning
- protein protein interactions
- computational biology
- artificial intelligence
- amino acids
- protein sequences
- semantic relations
- semantic similarity
- similarity function
- machine translation
- euclidean distance
- tandem mass spectra
- protein structure
- search algorithm
- structural similarities
- wordnet
- protein function
- question answering
- named entities
- similarity measurement
- word sense disambiguation
- named entity recognition