Marco Masseroli

ORCID

Publication Activity (10 Years)

Years Active: 2000-2024
Publications (10 Years): 60

Top Venues

BMC Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Bioinform.

Briefings Bioinform.

Publications

Aldo Sergi, Luca Beltrame, Sergio Marchini, Marco Masseroli
Integrated approach to generate artificial samples with low tumor fraction for somatic variant calling benchmarking. BMC Bioinform. 25 (1) (2024)
Andrea Mario Vergani, Alessandro Bagnato, Marco Masseroli
Predicting bovine daily milk yield by leveraging genomic breeding values. Comput. Electron. Agric. 219 (2024)
Silvia Cascianelli, Gaia Ceddia, Alberto Marchesi, Marco Masseroli
Identification of transcription factor high accumulation DNA zones. BMC Bioinform. 24 (1) (2023)
Silvia Cascianelli, Arianna Galzerano, Marco Masseroli
Supervised Relevance-Redundancy assessments for feature selection in omics-based classification scenarios. J. Biomed. Informatics 144 (2023)
Fabrizio Frasca, Matteo Matteucci, Michele Leone, Marco J. Morelli, Marco Masseroli
Accurate and highly interpretable prediction of gene expression from histone modifications. BMC Bioinform. 23 (1) (2022)
Simone Pallotta, Silvia Cascianelli, Marco Masseroli
RGMQL: scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor. BMC Bioinform. 23 (1) (2022)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Michele Leone, Eugenia Galeota, Marco Masseroli, Mattia Pelizzola
Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions. Bioinform. 38 (5) (2022)
Pietro Pinoli, Gaia Ceddia, Stefano Ceri, Marco Masseroli
Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Tommaso Alfonsi, Anna Bernasconi, Arif Canakoglu, Marco Masseroli
Genomic data integration and user-defined sample-set extraction for population variant analysis. BMC Bioinform. 23 (1) (2022)
Gianluca Moro, Marco Masseroli
Gene function finding through cross-organism ensemble learning. BioData Min. 14 (1) (2021)
Chiara Regondi, Maddalena Fratelli, Giovanna Damia, Federica Guffanti, Monica Ganzinelli, Matteo Matteucci, Marco Masseroli
Predictive modeling of gene expression regulation. BMC Bioinform. 22 (1) (2021)
Piervincenzo Ventrella, Giovanni Delgrossi, Gianmichele Ferrario, Marco Righetti, Marco Masseroli
Supervised machine learning for the assessment of Chronic Kidney Disease advancement. Comput. Methods Programs Biomed. 209 (2021)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri
The road towards data integration in human genomics: players, steps and interactions. Briefings Bioinform. 22 (1) (2021)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri
A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings Bioinform. 22 (2) (2021)
Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri
Federated sharing and processing of genomic datasets for tertiary data analysis. Briefings Bioinform. 22 (3) (2021)
Lorenzo Perino, Silvia Cascianelli, Marco Masseroli
Hybrid Evolutionary Framework for Selection of Genes Predicting Breast Cancer Relapse. IJCNN (2020)
Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Matrix Factorization-based Technique for Drug Repurposing Predictions. IEEE J. Biomed. Health Informatics 24 (11) (2020)
Arnaud Céol, Piero Montanari, Ilaria Bartolini, Stefano Ceri, Paolo Ciaccia, Marco Patella, Marco Masseroli
Search and comparison of (epi)genomic feature patterns in multiple genome browser tracks. BMC Bioinform. 21 (1) (2020)
Gaia Ceddia, Liuba Nausicaa Martino, Alice C. L. Parodi, Piercesare Secchi, Stefano Campaner, Marco Masseroli
Association rule mining to identify transcription factor interactions in genomic regions. Bioinform. 36 (4) (2020)
Marzia Settino, Anna Bernasconi, Gaia Ceddia, Giuseppe Agapito, Marco Masseroli, Mario Cannataro
Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets. BCB (2019)
Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. CIBB (2019)
Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning. CIBCB (2019)
Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. Bioinform. 35 (5) (2019)
Gaëtan Dissez, Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Drug Repositioning Predictions by Non-Negative Matrix Tri-Factorization of Integrated Association Data. BCB (2019)
Michele Leone, Marta Galvani, Marco Masseroli
De Novo Sequence-Based Method for ncRPI Prediction using Structural Information. BIBE (2019)
Gaia Ceddia, Sara Pidò, Marco Masseroli
Network Modeling and Analysis of Normal and Cancer Gene Expression Data. CIBB (2019)
Arif Canakoglu, Anna Bernasconi, Andrea Colombo, Marco Masseroli, Stefano Ceri
GenoSurf: metadata driven semantic search system for integrated genomic datasets. Database J. Biol. Databases Curation 2019 (2019)
Eirini Stamoulakatou, Carlo Piccardi, Marco Masseroli
Analysis of Gene Regulatory Networks Inferred from ChIP-seq Data. IWBBIO (1) (2019)
Fabrizio Frasca, Matteo Matteucci, Marco Masseroli, Marco J. Morelli
Modeling Gene Transcriptional Regulation by Means of Hyperplanes Genetic Clustering. IJCNN (2018)
Fabrizio Frasca, Matteo Matteucci, Marco J. Morelli, Marco Masseroli
Exposing and Characterizing Subpopulations of Distinctly Regulated Genes by K-Plane Regression. CIBB (2018)
Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Demonstration of GenoMetric Query Language. CIKM (2018)
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli
Using combined evidence from replicates to evaluate ChIP-seq peaks. Bioinform. 34 (13) (2018)
Davide Chicco, Fernando Palluzzi, Marco Masseroli
Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (3) (2018)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Data-Driven Genomic Computing: Making sense of Signals from the Genome. DAMDID/RCDL (2017)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Experiences in the Development of a Data Management System for Genomics. DATA (Revised Selected Papers) (2017)
Abdulrahman Kaitoua, Andrea Gulino, Marco Masseroli, Pietro Pinoli, Stefano Ceri
Scalable Genomic Data Management System on the Cloud. HPCS (2017)
Anna Bernasconi, Stefano Ceri, Alessandro Campi, Marco Masseroli
Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data. ER (2017)
Vahid Jalili, Matteo Matteucci, Marco J. Morelli, Marco Masseroli
MuSERA: Multiple Sample Enriched Region Assessment. Briefings Bioinform. 18 (3) (2017)
Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. DAMDID/RCDL (Selected Papers) (2017)
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Indexing Next-Generation Sequencing data. Inf. Sci. 384 (2017)
Alice Cambiaghi, Manuela Ferrario, Marco Masseroli
Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration. Briefings Bioinform. 18 (3) (2017)
Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco
Data Management for Heterogeneous Genomic Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Fabio Cumbo, Giulia Fiscon, Stefano Ceri, Marco Masseroli, Emanuel Weitschek
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas. BMC Bioinform. 18 (1) (2017)
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Stefano Ceri
Explorative visual analytics on interval-based genomic data and their metadata. BMC Bioinform. 18 (1) (2017)
Javier D. Fernández, Maurizio Lenzerini, Marco Masseroli, Francesco Venco, Stefano Ceri
Ontology-Based Search of Genomic Metadata. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (2) (2016)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Cross-organism learning method to discover new gene functionalities. Comput. Methods Programs Biomed. 126 (2016)
Arif Canakoglu, Stefano Ceri, Marco Masseroli
Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge. IWBBIO (2016)
Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco
Data Management for Next Generation Genomic Computing. EDBT (2016)
Luciano Milanesi, Alessandro Guffanti, Giancarlo Mauri, Marco Masseroli
BITS 2015: the annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 17 (S-12) (2016)
Marco Masseroli, Arif Canakoglu, Stefano Ceri
Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (2) (2016)
Piero Montanari, Ilaria Bartolini, Paolo Ciaccia, Marco Patella, Stefano Ceri, Marco Masseroli
Pattern Similarity Search in Genomic Sequences. IEEE Trans. Knowl. Data Eng. 28 (11) (2016)
Davide Chicco, Marco Masseroli
Ontology-Based Prediction and Prioritization of Gene Functional Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (2) (2016)
Piero Montanari, Ilaria Bartolini, Paolo Ciaccia, Marco Patella, Stefano Ceri, Marco Masseroli
Looking for Similar Patterns in Genomic Sequences. SEBD (2016)
Marco Masseroli, Pietro Pinoli, Francesco Venco, Abdulrahman Kaitoua, Vahid Jalili, Fernando Palluzzi, Heiko Müller, Stefano Ceri
GenoMetric Query Language: a novel approach to large-scale genomic data management. Bioinform. 31 (12) (2015)
Vahid Jalili, Matteo Matteucci, Marco Masseroli, Marco J. Morelli
Using combined evidence from replicates to evaluate ChIP-seq peaks. Bioinform. 31 (17) (2015)
Davide Chicco, Marco Masseroli
Software Suite for Gene and Protein Annotation Prediction and Similarity Search. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Davide Chicco, Marco Masseroli
Validation Pipeline for Computational Prediction of Genomics Annotations. CIBB (2015)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Computational algorithms to predict Gene Ontology annotations. BMC Bioinform. 16 (S-6) (2015)
Marco Masseroli, Matteo Picozzi, Giorgio Ghisalberti, Stefano Ceri
Explorative search of distributed bio-data to answer complex biomedical questions. BMC Bioinform. 15 (S-1) (2014)
Davide Chicco, Eleonora Ciceri, Marco Masseroli
Extended Spearman and Kendall Coefficients for Gene Annotation List Correlation. CIBB (2014)
Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. BMC Bioinform. 15 (S-1) (2014)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Discovering New Gene Functionalities from Random Perturbations of Known Gene Ontological Annotations. KDIR (2014)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction. CIBCB (2014)
Paolo Romano, Frédérique Lisacek, Marco Masseroli
NETTAB 2012 on "Integrated Bio-Search". BMC Bioinform. 15 (S-1) (2014)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Random Perturbations of Term Weighted Gene Ontology Annotations for Discovering Gene Unknown Functionalities. IC3K (Selected Papers) (2014)
Davide Chicco, Marco Masseroli
A discrete optimization approach for SVD best truncation choice based on ROC curves. BIBE (2013)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Weighting Scheme Methods for Enhanced Genomic Annotation Prediction. CIBB (2013)
Arif Canakoglu, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. BIBE (2013)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations. BIBE (2013)
Riccardo Bellazzi, Marco Masseroli, Shawn N. Murphy, Amnon Shabo, Paolo Romano
Clinical Bioinformatics: challenges and opportunities. BMC Bioinform. 13 (S-14) (2012)
Marco Masseroli, Davide Chicco, Pietro Pinoli
Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations. IJCNN (2012)
Marco Masseroli, Giorgio Ghisalberti, Stefano Ceri
Bio-Search Computing: Integration and global ranking of bioinformatics search results. J. Integr. Bioinform. 8 (2) (2011)
Davide Chicco, Marco Tagliasacchi, Marco Masseroli
Genomic Annotation Prediction Based on Integrated Information. CIBB (2011)
Giorgio Ghisalberti, Marco Masseroli, Salvatore Vadacca
Multi-domain data search and retrieval: A service-oriented Life Science scenario. CBMS (2011)
Marco Masseroli, Marco Tagliasacchi, Davide Chicco
Semantically improved genome-wide prediction of Gene Ontology annotations. ISDA (2011)
Marco Masseroli, Giorgio Ghisalberti, Stefano Ceri
Bio Search Computing: Bioinformatics web service integration for data-driven answering of complex Life Science questions. ICCS (2011)
Arif Canakoglu, Giorgio Ghisalberti, Marco Masseroli
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery. CIBB (2011)
Marco Masseroli, Giorgio Ghisalberti, Luca Tettamanti
Detection of Errors and Inconsistencies in Biomolecular Databases through Integrative Approaches and Quality Controls. BIBE (2010)
Marco Masseroli, Giorgio Ghisalberti
Bio-SeCo: Integration and Global Ranking of Biomedical Search Results. SeCO Workshop (2010)
Marco Tagliasacchi, Roberto Sarati, Marco Masseroli
Prediction of Gene Ontology Annotations Based on Gene Functional Clustering. BIBE (2010)
Giorgio Ghisalberti, Marco Masseroli, Luca Tettamanti
Quality controls in integrative approaches to detect errors and inconsistencies in biological databases. J. Integr. Bioinform. 7 (3) (2010)
Marco Masseroli, Norman W. Paton, Giorgio Ghisalberti
Search Computing: Integrating Ranked Data in the Life Sciences. DILS (2010)
Marco Masseroli, Stefano Ceri, Alessandro Campi
Integration and Mining of Genomic Annotations: Experiences and Perspectives in GFINDer Data Warehousing. DILS (2009)
Gabriele Giarratana, Marco Pizzera, Marco Masseroli, Enzo Medico, Pier Luca Lanzi
Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer Prognosis. BIBE (2009)
Matteo D'Antonio, Marco Masseroli
Extraction, integration and analysis of alternative splicing and protein structure distributed information. BMC Bioinform. 10 (S-12) (2009)
Marco Masseroli, Norman W. Paton, Irena Spasic
Search Computing and the Life Sciences. SeCO Workshop (2009)
Marco Tagliasacchi, Marco Masseroli
Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks. BIBE (2009)
Marco Masseroli, Mario Marchente
X-PAT: A Multiplatform Patient Referral Data Management System for Small Healthcare Institution Requirements. IEEE Trans. Inf. Technol. Biomed. 12 (4) (2008)
Stefano Ceri, Cristiana Bolchini, Daniele Braga, Marco Brambilla, Alessandro Campi, Sara Comai, Piero Fraternali, Pier Luca Lanzi, Marco Masseroli, Maristella Matera, Mauro Negri, Giuseppe Pelagatti, Giuseppe Pozzi, Elisa Quintarelli, Fabio Alberto Schreiber, Letizia Tanca
Data and web management research at Politecnico di Milano. SIGMOD Rec. 36 (4) (2007)
Marco Masseroli
Management and Analysis of Genomic Functional and Phenotypic Controlled Annotations to Support Biomedical Investigation and Practice. IEEE Trans. Inf. Technol. Biomed. 11 (4) (2007)
Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli
Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists. BMC Bioinform. 8 (S-1) (2007)
Luca Mazzola, Gianpiero Limongiello, Marco Masseroli, Francesco Pinciroli
PLARIS: a Web Framework for Offering Automatically Classified Biomedical Multimedia Resources. AMIA (2006)
Francesco Cogno, Marco Galimberti, Stefano Bonacina, Francesco Pinciroli, Marco Masseroli
GALCO: a Web-Based System for Biomedical Information Sharing. AMIA (2006)
Marco Masseroli, Alberto Visconti, Simone Giovanni Bano, Francesco Pinciroli
He@lthCo-op: a web-based system to support distributed healthcare co-operative work. Comput. Biol. Medicine 36 (2) (2006)
Marco Masseroli, Francesco Pinciroli
Using Gene Ontology and genomic controlled vocabularies to analyze high-throughput gene lists: Three tool comparison. Comput. Biol. Medicine 36 (7-8) (2006)
Sarah Burgarella, Dario Cattaneo, Marco Masseroli
A Web-Based Multi-Database System Supporting Distributed Collaborative Management and Sharing of Microarray Experiment Information. AMIA (2006)
Andrea Maffezzoli, Andrea Franceschini, Elisa Bellistri, Francesco Pinciroli, Marco Masseroli
Genomic Functional Investigation through Statistical Analysis of Protein Families and Domains. AMIA (2006)
Enrico Montanari, Marco Masseroli, Francesco Pinciroli
A Web System for Management of Medical Informatics Courses at "Politecnico di Milano". AMIA (2006)

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Publication Activity (10 Years)

Top Topics

Top Venues

Marco Masseroli