Pietro Pinoli

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 47

Top Topics

Latent Semantic

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Sofia Mongardi, Pietro Pinoli
Exploring Federated Learning for Emotion Recognition on Brain-Computer Interfaces. UMAP (Adjunct Publication) (2024)
Geng Liu, Pietro Pinoli, Stefano Ceri, Francesco Pierri
A comparison of online search engine autocompletion in Google and Baidu. CoRR (2024)
Carolina Testa, Sara Pidò, Emanuela Jacchetti, Manuela Teresa Raimondi, Stefano Ceri, Pietro Pinoli
Inference of Synthetically Lethal Pairs of Genes Involved in Metastatic Processes via Non-Negative Matrix Tri-Factorization. ICBBT (2023)
Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023)
Sara Pidò, Pietro Pinoli, Pietro Crovari, Francesca Ieva, Franca Garzotto, Stefano Ceri
Ask Your Data - Supporting Data Science Processes by Combining AutoML and Conversational Interfaces. IEEE Access 11 (2023)
Letizia Messa, Carolina Testa, Stephana Carelli, Federica Rey, Cristina Cereda, Manuela Teresa Raimondi, Stefano Ceri, Pietro Pinoli
Leveraging Non-negative Matrix Tri-Factorization and Knowledge-Based Embeddings for Drug Repurposing: an Application to Parkinson's Disease. ICBBE (2023)
Giulio Antonio Abbo, Pietro Crovari, Sara Pidò, Pietro Pinoli, Franca Garzotto
MCTK: a Multi-modal Conversational Troubleshooting Kit for supporting users in web applications. AVI (2022)
Anna Bernasconi, Pietro Pinoli
Conceptual models and databases for searching the genome. EDBT (2022)
Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38 (7) (2022)
Yohann Salomon, Pietro Pinoli
Generalization of Probabilistic Latent Semantic Analysis to k-partite Graphs. KDIR (2022)
Pietro Pinoli, Gaia Ceddia, Stefano Ceri, Marco Masseroli
Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Francisco Cristovao, Silvia Cascianelli, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Pietro Crovari, Sara Pidò, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Franca Garzotto, Stefano Ceri
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. ACM Trans. Comput. Heal. 3 (1) (2022)
Anna Bernasconi, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. Database J. Biol. Databases Curation 2021 (2021)
Arif Canakoglu, Pietro Pinoli, Anna Bernasconi, Tommaso Alfonsi, Damianos P. Melidis, Stefano Ceri
ViruSurf: an integrated database to investigate viral sequences. Nucleic Acids Res. 49 (Database-Issue) (2021)
Carolina Testa, Sara Pidò, Pietro Pinoli
A Non-Negative Matrix Tri-Factorization Based Method for Predicting Antitumor Drug Sensitivity. CIBB (2021)
Pietro Pinoli, Sriganesh Srihari, Limsoon Wong, Stefano Ceri
Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response. BMC Bioinform. 22 (1) (2021)
Amirreza Rouhi, Luca Nanni, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis. ICBBT (2021)
Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri
A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings Bioinform. 22 (2) (2021)
Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri
Federated sharing and processing of genomic datasets for tertiary data analysis. Briefings Bioinform. 22 (3) (2021)
Pietro Crovari, Fabio Catania, Pietro Pinoli, Philipp Roytburg, Asier Salzar, Franca Garzotto, Stefano Ceri
OK, DNA!: A Conversational Interface to Explore Genomic Data. CIU (2020)
Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Matrix Factorization-based Technique for Drug Repurposing Predictions. IEEE J. Biomed. Health Informatics 24 (11) (2020)
Stefano Ceri, Pietro Pinoli
Data Science for Genomic Data Management: Challenges, Resources, Experiences. SN Comput. Sci. 1 (1) (2020)
Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri
Empowering Virus Sequence Research Through Conceptual Modeling. ER (2020)
Eirini Stamoulakatou, Pietro Pinoli, Stefano Ceri, Rosario M. Piro
Impact of Mutational Signatures on microRNA and Their Response Elements. PSB (2020)
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets. BMC Bioinform. 20 (1) (2019)
Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. CIBB (2019)
Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning. CIBCB (2019)
Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. Bioinform. 35 (5) (2019)
Gaëtan Dissez, Gaia Ceddia, Pietro Pinoli, Stefano Ceri, Marco Masseroli
Drug Repositioning Predictions by Non-Negative Matrix Tri-Factorization of Integrated Association Data. BCB (2019)
Pietro Pinoli, Eirini Stamoulakatou, Stefano Ceri, Rosario M. Piro
Deleterious Impact of Mutational Processes on Transcription Factor Binding Sites in Human Cancer. BIBE (2019)
Andrea Gulino, Eirini Stamoulakatou, Arif Canakoglu, Pietro Pinoli
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types. BIBM (2019)
Pietro Pinoli, Stefano Ceri, Davide Martinenghi, Luca Nanni
Metadata management for scientific databases. Inf. Syst. 81 (2019)
Luca Nanni, Pietro Pinoli, Arif Canakoglu, Stefano Ceri
Exploring Genomic Datasets: from Batch to Interactive and Back. ExploreDB@SIGMOD/PODS (2018)
Stefano Perna, Pietro Pinoli, Stefano Ceri, Limsoon Wong
TICA: Transcriptional Interaction and Coregulation Analyzer. Genom. Proteom. Bioinform. 16 (5) (2018)
Stefano Ceri, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Demonstration of GenoMetric Query Language. CIKM (2018)
Eirini Stamoulakatou, Andrea Gulino, Pietro Pinoli
DLA: a Distributed, Location-based and Apriori-based Algorithm for Biological Sequence Pattern Mining. IEEE BigData (2018)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Data-Driven Genomic Computing: Making sense of Signals from the Genome. DAMDID/RCDL (2017)
Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
Experiences in the Development of a Data Management System for Genomics. DATA (Revised Selected Papers) (2017)
Abdulrahman Kaitoua, Andrea Gulino, Marco Masseroli, Pietro Pinoli, Stefano Ceri
Scalable Genomic Data Management System on the Cloud. HPCS (2017)
Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. DAMDID/RCDL (Selected Papers) (2017)
Abdulrahman Kaitoua, Pietro Pinoli, Michele Bertoni, Stefano Ceri
Framework for Supporting Genomic Operations. IEEE Trans. Computers 66 (3) (2017)
Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco
Data Management for Heterogeneous Genomic Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Simone Cattani, Stefano Ceri, Abdulrahman Kaitoua, Pietro Pinoli
Evaluating Genomic Big Data Operations on SciDB and Spark. ICWE (2017)
Simone Cattani, Stefano Ceri, Abdulrahman Kaitoua, Pietro Pinoli
Bi-Dimensional Binning for Big Genomic Datasets. BeyondMR@SIGMOD (2017)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Cross-organism learning method to discover new gene functionalities. Comput. Methods Programs Biomed. 126 (2016)
Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco
Data Management for Next Generation Genomic Computing. EDBT (2016)
Marco Masseroli, Pietro Pinoli, Francesco Venco, Abdulrahman Kaitoua, Vahid Jalili, Fernando Palluzzi, Heiko Müller, Stefano Ceri
GenoMetric Query Language: a novel approach to large-scale genomic data management. Bioinform. 31 (12) (2015)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Computational algorithms to predict Gene Ontology annotations. BMC Bioinform. 16 (S-6) (2015)
Michele Bertoni, Stefano Ceri, Abdulrahman Kaitoua, Pietro Pinoli
Evaluating cloud frameworks on genomic applications. IEEE BigData (2015)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Discovering New Gene Functionalities from Random Perturbations of Known Gene Ontological Annotations. KDIR (2014)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Latent Dirichlet Allocation based on Gibbs Sampling for gene function prediction. CIBCB (2014)
Giacomo Domeniconi, Marco Masseroli, Gianluca Moro, Pietro Pinoli
Random Perturbations of Term Weighted Gene Ontology Annotations for Discovering Gene Unknown Functionalities. IC3K (Selected Papers) (2014)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Weighting Scheme Methods for Enhanced Genomic Annotation Prediction. CIBB (2013)
Pietro Pinoli, Davide Chicco, Marco Masseroli
Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations. BIBE (2013)
Marco Masseroli, Davide Chicco, Pietro Pinoli
Probabilistic Latent Semantic Analysis for prediction of Gene Ontology annotations. IJCNN (2012)