Limsoon Wong

ORCID

Publication Activity (10 Years)

Years Active: 1989-2024
Publications (10 Years): 36

Top Venues

J. Bioinform. Comput. Biol.

Bioinform.

BMC Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Univ. Pennsylvania (PHD)

Education History

Univ. Pennsylvania

PHD

Publications

Limsoon Wong
An Intensional Expressiveness Gap of Comprehension Syntax. Tannen's Festschrift (2024)
Wilson Wen Bin Goh, Reuben Jyong Kiat Foo, Limsoon Wong
What can scatterplots teach us about doing data science better? Int. J. Data Sci. Anal. 17 (1) (2024)
Weijia Kong, Bertrand Jern Han Wong, Harvard Wai Hann Hui, Kai Peng Lim, Yulan Wang, Limsoon Wong, Wilson Wen Bin Goh
ProJect: a powerful mixed-model missing value imputation method. Briefings Bioinform. 24 (4) (2023)
Wei Xin Chan, Limsoon Wong
Obstacles to effective model deployment in healthcare. J. Bioinform. Comput. Biol. 21 (2) (2023)
Wilson Wen Bin Goh, Weijia Kong, Limsoon Wong
Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities. J. Bioinform. Comput. Biol. 21 (1) (2023)
Chowdhury Rafeed Rahman, Limsoon Wong
How much can ChatGPT really help Computational Biologists in Programming? CoRR (2023)
Hui Peng, Limsoon Wong, Wilson Wen Bin Goh
ProInfer: An interpretable protein inference tool leveraging on biological networks. PLoS Comput. Biol. 19 (3) (2023)
Stefano Perna, Val Tannen, Limsoon Wong
Iterating on multiple collections in synchrony. J. Funct. Program. 32 (2022)
Mohammad Neamul Kabir, Limsoon Wong
EnsembleFam: towards more accurate protein family prediction in the twilight zone. BMC Bioinform. 23 (1) (2022)
Wei Xin Chan, Limsoon Wong
Accounting for treatment during the development or validation of prediction models. J. Bioinform. Comput. Biol. 20 (6) (2022)
Luyu Xie, Limsoon Wong
PDR: a new genome assembly evaluation metric based on genetics concerns. Bioinform. 37 (3) (2021)
Sung Yang Ho, Sophia Tan, Chun Chau Sze, Limsoon Wong, Wilson Wen Bin Goh
What can Venn diagrams teach us about doing data science better? Int. J. Data Sci. Anal. 11 (1) (2021)
Pietro Pinoli, Sriganesh Srihari, Limsoon Wong, Stefano Ceri
Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response. BMC Bioinform. 22 (1) (2021)
Runbin Tang, Zuguo Yu, Yuanlin Ma, Yaoqun Wu, Yi-Ping Phoebe Chen, Limsoon Wong, Jinyan Li
Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning. Bioinform. 37 (6) (2021)
Sung Yang Ho, Limsoon Wong, Wilson Wen Bin Goh
Avoid Oversimplifications in Machine Learning: Going beyond the Class-Prediction Accuracy. Patterns 1 (2) (2020)
Wilson Wen Bin Goh, Limsoon Wong
The Birth of Bio-data Science: Trends, Expectations, and Applications. Genom. Proteom. Bioinform. 18 (1) (2020)
Yuansheng Liu, Limsoon Wong, Jinyan Li
Allowing mutations in maximal matches boosts genome compression performance. Bioinform. 36 (18) (2020)
Sung Yang Ho, Kimberly Phua, Limsoon Wong, Wilson Wen Bin Goh
Extensions of the External Validation for Checking Learned Model Interpretability and Generalizability. Patterns 1 (8) (2020)
Wilson Wen Bin Goh, Limsoon Wong
Advanced bioinformatics methods for practical applications in proteomics. Briefings Bioinform. 20 (1) (2019)
Peng Jiang, Jie Luo, Yiqi Wang, Pingji Deng, Bertil Schmidt, Xiangjun Tang, Ningjiang Chen, Limsoon Wong, Liang Zhao
kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers. Bioinform. 35 (23) (2019)
Iana Pyrogova, Limsoon Wong
Protein complex prediction by date hub removal. Comput. Biol. Chem. 74 (2018)
Stefano Perna, Pietro Pinoli, Stefano Ceri, Limsoon Wong
TICA: Transcriptional Interaction and Coregulation Analyzer. Genom. Proteom. Bioinform. 16 (5) (2018)
Abha Belorkar, Rajanikanth Vadigepalli, Limsoon Wong
SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data. BMC Syst. Biol. 12 (S-2) (2018)
Jinyan Li, Kenta Nakai, Yun Zheng, Kengo Sato, Limsoon Wong
Introduction to Selected Papers from GIW2018. J. Bioinform. Comput. Biol. 16 (6) (2018)
Qian Liu, Shameek Ghosh, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
Discovering pan-correlation patterns from time course data sets by efficient mining algorithms. Computing 100 (4) (2018)
Soheil Jahangiri-Tazehkand, Limsoon Wong, Changiz Eslahchi
OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation. Genom. Proteom. Bioinform. 15 (6) (2017)
Wilson Wen Bin Goh, Limsoon Wong
Protein complex-based analysis is resistant to the obfuscating consequences of batch effects - a case study in clinical proteomics. BMC Genom. 18 (S2) (2017)
Yuansheng Liu, Hui Peng, Limsoon Wong, Jinyan Li
High-speed and high-ratio referential genome compression. Bioinform. 33 (21) (2017)
Yuriy L. Orlov, Nikolay A. Kolchanov, Ralf Hofestädt, Limsoon Wong
Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary. J. Bioinform. Comput. Biol. 15 (2) (2017)
Wei Zhong Toh, Kwok Pui Choi, Limsoon Wong
Redhyte: a self-diagnosing, self-correcting, and helpful hypothesis analysis platform. J. Inf. Telecommun. 1 (3) (2017)
Liang Zhao, Qingfeng Chen, Wencui Li, Peng Jiang, Limsoon Wong, Jinyan Li
MapReduce for accurate error correction of next-generation sequencing data. Bioinform. 33 (23) (2017)
Wilson Wen Bin Goh, Limsoon Wong
Spectra-first feature analysis in clinical proteomics - A case study in renal cancer. J. Bioinform. Comput. Biol. 14 (5) (2016)
Qian Liu, Jinyan Li, Limsoon Wong, Kotagiri Ramamohanarao
Efficient Mining of Pan-Correlation Patterns from Time Course Data. ADMA (2016)
Abha Belorkar, Limsoon Wong
GFS: fuzzy preprocessing for effective gene expression analysis. BMC Bioinform. 17 (S-17) (2016)
Wei Zhong Toh, Kwok Pui Choi, Limsoon Wong
Redhyte: Towards a Self-diagnosing, Self-correcting, and Helpful Analytic Platform. ACIIDS (2) (2016)
Wilson Wen Bin Goh, Limsoon Wong
Evaluating feature-selection stability in next-generation proteomics. J. Bioinform. Comput. Biol. 14 (5) (2016)
Osamu Maruyama, Limsoon Wong
Regularizing predicted complexes by mutually exclusive protein-protein interactions. ASONAM (2015)
Chern Han Yong, Limsoon Wong
From the static interactome to dynamic protein complexes: Three challenges. J. Bioinform. Comput. Biol. 13 (2) (2015)
Kevin Lim, Zhenhua Li, Kwok Pui Choi, Limsoon Wong
A quantum leap in the reproducibility, precision, and sensitivity of gene expression profile analysis even when sample size is extremely small. J. Bioinform. Comput. Biol. 13 (4) (2015)
Guimei Liu, Haojun Zhang, Mengling Feng, Limsoon Wong, See-Kiong Ng
Supporting Exploratory Hypothesis Testing and Analysis. ACM Trans. Knowl. Discov. Data 9 (4) (2015)
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Ming Li, Limsoon Wong
John Wooley and JBCB. J. Bioinform. Comput. Biol. 13 (4) (2015)
Golnaz Taheri, Marzieh Ayati, Limsoon Wong, Changiz Eslahchi
Two scenarios for overcoming drug resistance by co-targeting. Int. J. Bioinform. Res. Appl. 11 (1) (2015)
Dimitrios Kleftogiannis, Limsoon Wong, John A. C. Archer, Panos Kalnis
Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions. Bioinform. 31 (14) (2015)
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains. BMC Bioinform. 15 (2014)
John C. Wooley, Ming Li, Limsoon Wong
JBCB, the first decade. J. Bioinform. Comput. Biol. 12 (3) (2014)
Mengyuan Fan, Hong Sang Low, Hufeng Zhou, Markus R. Wenk, Limsoon Wong
LipidGO: database for lipid-related GO terms and applications. Bioinform. 30 (7) (2014)
Liang Zhao, Steven C. H. Hoi, Zhenhua Li, Limsoon Wong, Hung T. Nguyen, Jinyan Li
Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots. BMC Bioinform. 15 (2014)
Chern Han Yong, Osamu Maruyama, Limsoon Wong
Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst. Biol. 8 (S-5) (2014)
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
Guest Editorial for the International Conference on Genome Informatics (GIW 2013). IEEE ACM Trans. Comput. Biol. Bioinform. 11 (1) (2014)
Mengyuan Fan, Hong Sang Low, Markus R. Wenk, Limsoon Wong
A semi-automated methodology for finding lipid-related GO terms. Database J. Biol. Databases Curation 2014 (2014)
Guimei Liu, Haojun Zhang, Limsoon Wong
A Flexible Approach to Finding Representative Pattern Sets. IEEE Trans. Knowl. Data Eng. 26 (7) (2014)
Alireza Vazifedoost, Maseud Rahgozar, Behzad Moshiri, Mehdi Sadeghi, Hon Nian Chua, See-Kiong Ng, Limsoon Wong
Using data fusion for scoring reliability of protein-protein interactions. J. Bioinform. Comput. Biol. 12 (4) (2014)
Kevin Lim, Limsoon Wong
Finding consistent disease subnetworks using PFSNet. Bioinform. 30 (2) (2014)
Guimei Liu, Andre Suchitra, Limsoon Wong
A Performance Study of Three Disk-based Structures for Indexing and Querying Frequent Itemsets. Proc. VLDB Endow. 6 (7) (2013)
Yue Wang, Wilson Wen Bin Goh, Limsoon Wong, Giovanni Montana
Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes. BMC Bioinform. 14 (S-16) (2013)
Hufeng Zhou, Javad Rezaei, Hugo Willy, Shangzhi Gao, Jingjing Jin, Mengyuan Fan, Chern Han Yong, Michal Wozniak, Limsoon Wong
Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions. BMC Syst. Biol. 7 (S-6) (2013)
Limsoon Wong
An Introduction to some New Results in Bioinformatics and Computational Biology. J. Bioinform. Comput. Biol. 11 (2) (2013)
Zhenhua Li, Ying He, Qian Liu, Liang Zhao, Limsoon Wong, Chee Keong Kwoh, Hung T. Nguyen, Jinyan Li
Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding. BMC Bioinform. 14 (S-16) (2013)
Limsoon Wong
The Dichotomous Intensional Expressive Power of the Nested Relational Calculus with Powerset. In Search of Elegance in the Theory and Practice of Computation (2013)
Jingjing Jin, Jun Liu, Huan Wang, Limsoon Wong, Nam-Hai Chua
PLncDB: plant long non-coding RNA database. Bioinform. 29 (8) (2013)
Hufeng Zhou, Jingjing Jin, Limsoon Wong
Progress in Computational Studies of Host-pathogen Interactions. J. Bioinform. Comput. Biol. 11 (2) (2013)
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions. BMC Syst. Biol. 7 (S-6) (2013)
Limsoon Wong
A dichotomy in the intensional expressive power of nested relational calculi augmented with aggregate functions and a powerset operator. PODS (2013)
Golnaz Taheri, Mahnaz Habibi, Limsoon Wong, Changiz Eslahchi
Disruption of protein complexes. J. Bioinform. Comput. Biol. 11 (3) (2013)
Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong
The 24th International Conference on genome Informatics, Giw2013, in Singapore. J. Bioinform. Comput. Biol. 11 (6) (2013)
Chern Han Yong, Guimei Liu, Hon Nian Chua, Limsoon Wong
Supervised maximum-likelihood weighting of composite protein networks for complex prediction. BMC Syst. Biol. 6 (S-2) (2012)
Kevin Lim, Limsoon Wong
CMPF: Class-switching minimized pathfinding in metabolic networks. BMC Bioinform. 13 (S-17) (2012)
Wilson Wen Bin Goh, Yie Hou Lee, Zubaidah M. Ramdzan, Maxey C. M. Chung, Limsoon Wong, Marek J. Sergot
A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression. Int. J. Bioinform. Res. Appl. 8 (3/4) (2012)
Wilson Wen Bin Goh, Hirotaka Oikawa, Judy Chia Ghee Sng, Marek J. Sergot, Limsoon Wong
The role of miRNAs in complex formation and control. Bioinform. 28 (4) (2012)
Hon Nian Chua, Limsoon Wong
Predicting Protein Functions from Protein Interaction Networks. Int. J. Knowl. Discov. Bioinform. 3 (4) (2012)
Zhenhua Li, Ying He, Limsoon Wong, Jinyan Li
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinform. 13 (2012)
Peng Chen, Limsoon Wong, Jinyan Li
Detection of Outlier Residues for Improving Interface Prediction in Protein Heterocomplexes. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Guimei Liu, Haojun Zhang, Limsoon Wong
Finding minimum representative pattern sets. KDD (2012)
Min Wu, Xiaoli Li, Chee Keong Kwoh, See-Kiong Ng, Limsoon Wong
Discovery of Protein Complexes with Core-Attachment Structures from Tandem Affinity Purification (TAP) Data. J. Comput. Biol. 19 (9) (2012)
Zhenhua Li, Ying He, Longbing Cao, Limsoon Wong, Jinyan Li
Conservation of water molecules in protein binding interfaces. Int. J. Bioinform. Res. Appl. 8 (3/4) (2012)
Limsoon Wong
A Short Introduction to Some Recent Progress in phylogenetic Network Reconstruction, genome Mapping, gene Expression Analysis, molecular Dynamic Simulation, and Other Problems in Bioinformatics. J. Bioinform. Comput. Biol. 10 (4) (2012)
Guimei Liu, Andre Suchitra, Haojun Zhang, Mengling Feng, See-Kiong Ng, Limsoon Wong
AssocExplorer: an association rule visualization system for exploratory data analysis. KDD (2012)
Chuan Hock Koh, Sucheendra K. Palaniappan, P. S. Thiagarajan, Limsoon Wong
Improved statistical model checking methods for pathway analysis. BMC Bioinform. 13 (S-17) (2012)
Hufeng Zhou, Jingjing Jin, Haojun Zhang, Bo Yi, Michal Wozniak, Limsoon Wong
IntPath-an integrated pathway gene relationship database for model organisms and important pathogens. BMC Syst. Biol. 6 (S-2) (2012)
Yue Wang, Guimei Liu, Mengling Feng, Limsoon Wong
Response: an empirical comparison of several recent epistatic interaction detection methods. Bioinform. 28 (1) (2012)
Liang Zhao, Limsoon Wong, Lanyuan Lu, Steven C. H. Hoi, Jinyan Li
B-cell epitope prediction through a graph model. BMC Bioinform. 13 (S-17) (2012)
Chuan Hock Koh, Limsoon Wong
Embracing noise to improve cross-batch prediction accuracy. BMC Syst. Biol. 6 (S-2) (2012)
Zhenhua Li, Limsoon Wong, Jinyan Li
DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts. BMC Syst. Biol. 5 (S-1) (2011)
Limsoon Wong
Brief Introduction to Some New Papers on Lateral Transfer Reconstruction, Drug Candidate Screening, Disease Gene Identification, and Other Results. J. Bioinform. Comput. Biol. 9 (4) (2011)
Zhengkui Wang, Yue Wang, Kian-Lee Tan, Limsoon Wong, Divyakant Agrawal
: an efficient Cloud Epistasis cOmputing model in genome-wide association study. Bioinform. 27 (8) (2011)
Liang Zhao, Limsoon Wong, Jinyan Li
Antibody-Specified B-Cell Epitope Prediction in Line with the Principle of Context-Awareness. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Limsoon Wong
Introduction - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More. J. Bioinform. Comput. Biol. 9 (6) (2011)
Michal Wozniak, Limsoon Wong, Jerzy Tiuryn
CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains. Bioinform. 27 (23) (2011)
Guimei Liu, Haojun Zhang, Limsoon Wong
Controlling False Positives in Association Rule Mining CoRR (2011)
Guimei Liu, Haojun Zhang, Limsoon Wong
Controlling False Positives in Association Rule Mining. Proc. VLDB Endow. 5 (2) (2011)
Yue Wang, Guimei Liu, Mengling Feng, Limsoon Wong
An empirical comparison of several recent epistatic interaction detection methods. Bioinform. 27 (21) (2011)
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
Finding consistent disease subnetworks across microarray datasets. BMC Bioinform. 12 (S-13) (2011)
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano
MIRACH: efficient model checker for quantitative biological pathway models. Bioinform. 27 (5) (2011)
Guimei Liu, Mengling Feng, Yue Wang, Limsoon Wong, See-Kiong Ng, Tzia Liang Mah, Edmund Jon Deoon Lee
Towards exploratory hypothesis testing and analysis. ICDE (2011)
David Lo, Jinyan Li, Limsoon Wong, Siau-Cheng Khoo
Mining Iterative Generators and Representative Rules for Software Specification Discovery. IEEE Trans. Knowl. Data Eng. 23 (2) (2011)
Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh, Limsoon Wong, Jinyan Li
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinform. 27 (18) (2011)
Limsoon Wong
Using Biological Networks in Protein Function Prediction and Gene Expression Analysis. Internet Math. 7 (4) (2011)
Limsoon Wong
Brief Introduction to Some New Results in Gene Expression Analysis, Systems Biology Modeling, Motif Identification, and (noncoding) RNA Analysis. J. Bioinform. Comput. Biol. 8 (4) (2010)

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Publication Activity (10 Years)

Top Topics

Top Venues

Limsoon Wong