Satoru Miyano

ORCID

Publication Activity (10 Years)

Years Active: 1980-2024
Publications (10 Years): 41

Top Venues

Publications

Satoshi Ito, Kenji Ono, Satoru Miyano
Large-scaleWGS Analysis on the supercomputer Fugaku. ICBBB (2024)
Satoshi Ito, Satoru Miyano, Kenji Ono
Acceleration of BAM I/O on distributed file systems. BIBM (2023)
Heewon Park, Seiya Imoto, Satoru Miyano
Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification. J. Comput. Biol. 30 (2) (2023)
Yusuke Matsui, Yuichi Abe, Kohei Uno, Satoru Miyano
RoDiCE: robust differential protein co-expression analysis for cancer complexome. Bioinform. 38 (5) (2022)
Heewon Park, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification. J. Comput. Biol. 29 (3) (2022)
Heewon Park, Seiya Imoto, Satoru Miyano
PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis. BMC Bioinform. 23 (1) (2022)
Zeheng Bai, Yao-zhong Zhang, Satoru Miyano, Rui Yamaguchi, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto
Identification of bacteriophage genome sequences with representation learning. Bioinform. 38 (18) (2022)
Chen Li, Jiale Qin, Keisuke Kuroyanagi, Lu Lu, Masao Nagasaki, Satoru Miyano
High-speed parameter search of dynamic biological pathways from time-course transcriptomic profiles using high-level Petri net. Biosyst. 201 (2021)
Yao-Zhong Zhang, Kiyoshi Yamaguchi, Sera Hatakeyama, Yoichi Furukawa, Satoru Miyano, Rui Yamaguchi, Seiya Imoto
On the application of BERT models for nanopore methylation detection. BIBM (2021)
Yao-Zhong Zhang, Seiya Imoto, Satoru Miyano, Rui Yamaguchi
Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers. PLoS Comput. Biol. 17 (10) (2021)
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo G. Gut, David Haan, Arif O. Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578 (7793) (2020)
Takanori Hasegawa, Rui Yamaguchi, Atsushi Niida, Satoru Miyano, Seiya Imoto
Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model. J. Frankl. Inst. 357 (5) (2020)
Takuya Moriyama, Seiya Imoto, Satoru Miyano, Rui Yamaguchi
Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection. ISMCO (2020)
Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi
Nanopore basecalling from a perspective of instance segmentation. BMC Bioinform. (3) (2020)
Takanori Hasegawa, Shuto Hayashi, Eigo Shimizu, Shinichi Mizuno, Atsushi Niida, Rui Yamaguchi, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto
Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens. Bioinform. 36 (18) (2020)
Koji Maruhashi, Heewon Park, Rui Yamaguchi, Satoru Miyano
Linear Tensor Projection Revealing Nonlinearity. CoRR (2020)
Satoshi Ito, Masaaki Yadome, Tatsuo Nishiki, Shigeru Ishiduki, Hikaru Inoue, Rui Yamaguchi, Satoru Miyano
Virtual Grid Engine: a simulated grid engine environment for large-scale supercomputers. BMC Bioinform. (16) (2019)
Heewon Park, Makoto Yamada, Seiya Imoto, Satoru Miyano
Robust Sample-Specific Stability Selection with Effective Error Control. J. Comput. Biol. 26 (3) (2019)
Takuya Moriyama, Seiya Imoto, Shuto Hayashi, Yuichi Shiraishi, Satoru Miyano, Rui Yamaguchi
A Bayesian model integration for mutation calling through data partitioning. Bioinform. 35 (21) (2019)
Shuto Hayashi, Takuya Moriyama, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto
ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data. J. Comput. Biol. 26 (9) (2019)
Takuya Moriyama, Seiya Imoto, Satoru Miyano, Rui Yamaguchi
Accurate and Flexible Bayesian Mutation Call from Multi-regional Tumor Samples. ISMCO (2019)
Heewon Park, Teppei Shimamura, Seiya Imoto, Satoru Miyano
Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks. J. Comput. Biol. 25 (2) (2018)
Satoshi Ito, Masaaki Yadome, Tatsuo Nishiki, Shigeru Ishiduki, Hikaru Inoue, Rui Yamaguchi, Satoru Miyano
Virtual Grid Engine: Accelerating thousands of omics sample analyses using large-scale supercomputers. BIBM (2018)
Yusuke Matsui, Atsushi Niida, Ryutaro Uchi, Koshi Mimori, Satoru Miyano, Teppei Shimamura
phyC: Clustering cancer evolutionary trees. PLoS Comput. Biol. 13 (5) (2017)
Yusuke Matsui, Satoru Miyano, Teppei Shimamura
Tumor Subclonal Progression Model for Cancer Hallmark Acquisition. CIBB (2017)
Heewon Park, Atsushi Niida, Seiya Imoto, Satoru Miyano
Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level. J. Comput. Biol. 24 (2) (2017)
Teppei Shimamura, Yusuke Matsui, Taisuke Kajino, Satoshi Ito, Takashi Takahashi, Satoru Miyano
GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics. CIBB (2017)
Yao-Zhong Zhang, Seiya Imoto, Satoru Miyano, Rui Yamaguchi
Reconstruction of high read-depth signals from low-depth whole genome sequencing data using deep learning. BIBM (2017)
Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi
A framework for generating interactive reports for cancer genome analysis. J. Open Source Softw. 2 (20) (2017)
Heewon Park, Yuichi Shiraishi, Seiya Imoto, Satoru Miyano
A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (4) (2017)
Yusuke Matsui, Masahiro Mizuta, Satoshi Ito, Satoru Miyano, Teppei Shimamura
M: detection of differential distributions of methylation levels. Bioinform. 32 (15) (2016)
Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads. ISBRA (2016)
Emi Ayada, Takanori Hasegawa, Atsushi Niida, Satoru Miyano, Seiya Imoto
Binary contingency table method for analysing gene mutation in cancer genome. Int. J. Bioinform. Res. Appl. 12 (3) (2016)
Tetsuhiro Yoshino, Kotoe Katayama, Yuko Horiba, Kaori Munakata, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Hideki Mima, Kenji Watanabe
Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study. BMC Medical Informatics Decis. Mak. 16 (2016)
Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto
A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models. Comput. Stat. Data Anal. 94 (2016)
Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto
Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome. ISBRA (2015)
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Teppei Shimamura, Satoru Miyano, Seiya Imoto, Tatsuya Akutsu
Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks. BMC Syst. Biol. 9 (2015)
Kenichi Chiba, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Seiya Imoto, Seishi Ogawa, Satoru Miyano
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data. Bioinform. 31 (1) (2015)
Heewon Park, Atsushi Niida, Satoru Miyano, Seiya Imoto
Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis. J. Comput. Biol. 22 (2) (2015)
Tomohiro Yasuda, Satoru Miyano
Inferring the global structure of chromosomes from structural variations. BMC Genom. 16 (S-2) (2015)
Satoshi Ito, Yuichi Shiraishi, Teppei Shimamura, Kenichi Chiba, Satoru Miyano
High performance computing of a fusion gene detection pipeline on the K computer. BIBM (2015)
Takanori Hasegawa, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
An efficient method of exploring simulation models by assimilating literature and biological observational data. Biosyst. 121 (2014)
Takanori Hasegawa, Tomoya Mori, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tatsuya Akutsu
An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data. J. Comput. Biol. 21 (11) (2014)
Chen Li, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Satoru Miyano
CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML. Biosyst. 121 (2014)
Alok Sharma, Kuldip K. Paliwal, Seiya Imoto, Satoru Miyano, Vandana Sharma, Rajeshkannan Ananthanarayanan
A feature selection method using fixed-point algorithm for DNA microarray gene expression data. Int. J. Knowl. Based Intell. Eng. Syst. 18 (1) (2014)
Naoto Usuyama, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano, Seiya Imoto
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinform. 30 (23) (2014)
Alok Sharma, Kuldip K. Paliwal, Seiya Imoto, Satoru Miyano
A feature selection method using improved regularized linear discriminant analysis. Mach. Vis. Appl. 25 (3) (2014)
Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi
Parameter estimation in multi-compartment SIR model. FUSION (2014)
Alok Sharma, Kuldip K. Paliwal, Abdollah Dehzangi, James G. Lyons, Seiya Imoto, Satoru Miyano
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition. BMC Bioinform. 14 (2013)
Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi
Estimation of abrupt changes in sentinel observation data of influenza epidemics in Japan. FUSION (2013)
Mitsunori Kayano, Seiya Imoto, Rui Yamaguchi, Satoru Miyano
Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations. J. Comput. Biol. 20 (8) (2013)
Atsushi Niida, Georg Tremmel, Seiya Imoto, Satoru Miyano
Multilayer Cluster Heat Map Visualizing Biological Tensor Data. BSB (2013)
Masao Nagasaki, André Fujita, Yayoi Sekiya, Ayumu Saito, Emi Ikeda, Chen Li, Satoru Miyano
XiP: a computational environment to create, extend and share workflows. Bioinform. 29 (1) (2013)
Alok Sharma, Kuldip K. Paliwal, Seiya Imoto, Satoru Miyano
Principal component analysis using QR decomposition. Int. J. Mach. Learn. Cybern. 4 (6) (2013)
Alok Sharma, Seiya Imoto, Satoru Miyano
A Top-r Feature Selection Algorithm for Microarray Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Alok Sharma, Seiya Imoto, Satoru Miyano, Vandana Sharma
Null space based feature selection method for gene expression data. Int. J. Mach. Learn. Cybern. 3 (4) (2012)
André Fujita, Patricia Severino, Kaname Kojima, João Ricardo Sato, Alexandre Galvão Patriota, Satoru Miyano
Functional clustering of time series gene expression data by Granger causality. BMC Syst. Biol. 6 (2012)
Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano
Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genom. 13 (S-1) (2012)
Shigeo Fujimori, Naoya Hirai, Kazuyo Masuoka, Tomohiro Oshikubo, Tatsuhiro Yamashita, Takanori Washio, Ayumu Saito, Masao Nagasaki, Satoru Miyano, Etsuko Miyamoto-Sato
IRView: a database and viewer for protein interacting regions. Bioinform. 28 (14) (2012)
Atsushi Niida, Seiya Imoto, Teppei Shimamura, Satoru Miyano
Statistical model-based testing to evaluate the recurrence of genomic aberrations. Bioinform. 28 (12) (2012)
Alok Sharma, Seiya Imoto, Satoru Miyano
A between-Class Overlapping Filter-Based Method for transcriptome Data Analysis. J. Bioinform. Comput. Biol. 10 (5) (2012)
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Kentaro Ogami, Rui Yamaguchi, Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Cristin G. Print, Satoru Miyano
Computational gene network analysis reveals TNF-induced angiogenesis. BMC Syst. Biol. 6 (S-2) (2012)
Tomohiro Yasuda, Shin Suzuki, Masao Nagasaki, Satoru Miyano
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs. BMC Bioinform. 13 (2012)
Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi
Identifiability of local transmissibility parameters in agent-based pandemic simulation. FUSION (2012)
Kotoe Katayama, Seiya Imoto, Kenji Watanabe, Rui Yamaguchi, Keiko Matsuura, Satoru Miyano
Analysis of questionnaire for traditional medical and develop decision support system. BIBM Workshops (2012)
Yoshinori Tamada, Seiya Imoto, Satoru Miyano
Parallel Algorithm for Learning Optimal Bayesian Network Structure. J. Mach. Learn. Res. 12 (2011)
Kotoe Katayama, Rui Yamaguchi, Seiya Imoto, Keiko Matsuura, Kenji Watanabe, Satoru Miyano
Clustering for Visual Analogue Scale Data in Symbolic Data Analysis. Complex Adaptive Systems (2011)
Georgios Chalkidis, Masao Nagasaki, Satoru Miyano
High Performance Hybrid Functional Petri Net Simulations of Biological Pathway Models on CUDA. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Kotoe Katayama, Rui Yamaguchi, Seiya Imoto, Keiko Matsuura, Kenji Watanabe, Satoru Miyano
Transform of visual analogue scale data and their clustering. Int. J. Knowl. Eng. Soft Data Paradigms 3 (2) (2011)
Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi
Estimation of macroscopic parameter in agent-based pandemic simulation. FUSION (2011)
Masaya M. Saito, Seiya Imoto, Rui Yamaguchi, Satoru Miyano, Tomoyuki Higuchi
Parallel Agent-Based Simulator for Influenza Pandemic. AAMAS Workshops (2011)
Euna Jeong, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Ayumu Saito, Satoru Miyano
CSO validator: improving manual curation workflow for biological pathways. Bioinform. 27 (17) (2011)
Tsutomu Osoda, Satoru Miyano
2D-Qsar for 450 types of amino acid induction peptides with a novel substructure pair descriptor having wider scope. J. Cheminformatics 3 (2011)
Yoshinori Tamada, Seiya Imoto, Hiromitsu Araki, Masao Nagasaki, Cristin G. Print, Stephen D. Charnock-Jones, Satoru Miyano
Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (3) (2011)
Hiroshi Matsuno, Masao Nagasaki, Satoru Miyano
Hybrid Petri net based modeling for biological pathway simulation. Nat. Comput. 10 (3) (2011)
Euna Jeong, Masao Nagasaki, Kazuko Ueno, Satoru Miyano
Ontology-based instance data validation for high-quality curated biological pathways. BMC Bioinform. 12 (S-1) (2011)
Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano
Systems biology model repository for macrophage pathway simulation. Bioinform. 27 (11) (2011)
Xue-Wen Chen, Satoru Miyano
INTRODUCTION - The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11. J. Bioinform. Comput. Biol. 9 (5) (2011)
Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano, Masao Nagasaki
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. BMC Bioinform. 12 (S-14) (2011)
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano
MIRACH: efficient model checker for quantitative biological pathway models. Bioinform. 27 (5) (2011)
Yoshinori Tamada, Rui Yamaguchi, Seiya Imoto, Osamu Hirose, Ryo Yoshida, Masao Nagasaki, Satoru Miyano
SiGN-SSM: open source parallel software for estimating gene networks with state space models. Bioinform. 27 (8) (2011)
André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Rui Yamaguchi, Teppei Shimamura, Carlos Eduardo Ferreira, Mari Cleide Sogayar, Satoru Miyano
Inferring Contagion in Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano
A rank-based statistical test for measuring synergistic effects between two gene sets. Bioinform. 27 (17) (2011)
Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano
Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation. ISBRA (2011)
Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano
Poster: Comprehensive pharmacogenomic pathway screening by data assimilation. ICCABS (2011)
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Limsoon Wong, Satoru Miyano
DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinform. 26 (14) (2010)
Yoshimasa Miwa, Chen Li, Qi-Wei Ge, Hiroshi Matsuno, Satoru Miyano
On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules. Silico Biol. 10 (1-2) (2010)
Yoshimasa Miwa, Yuki Murakami, Qi-Wei Ge, Chen Li, Hiroshi Matsuno, Satoru Miyano
Delay Time Determination for the Timed Petri Net Model of a Signaling Pathway Based on Its Structural Information. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (12) (2010)
Jin Hwan Do, Masao Nagasaki, Satoru Miyano
The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis. Biosyst. 100 (3) (2010)
Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano
Inferring dynamic gene networks under varying conditions for transcriptomic network comparison. Bioinform. 26 (8) (2010)
Chen Li, Masao Nagasaki, Ayumu Saito, Satoru Miyano
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. BMC Syst. Biol. 4 (2010)
Tomoya Higashigaki, Kaname Kojima, Rui Yamaguchi, Masato Inoue, Seiya Imoto, Satoru Miyano
Identifying Hidden Confounders in Gene Networks by Bayesian Networks. BIBE (2010)
Kaname Kojima, Masao Nagasaki, Satoru Miyano
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. BMC Bioinform. 11 (2010)
Teppei Shimamura, Seiya Imoto, Atsushi Niida, Masao Nagasaki, Rui Yamaguchi, Satoru Miyano
Network profiling analysis for generating modulator-dependent gene networks. BIBM Workshops (2010)
Kaname Kojima, Eric Perrier, Seiya Imoto, Satoru Miyano
Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure. J. Mach. Learn. Res. 11 (2010)
Seiya Imoto, Kaname Kojima, Eric Perrier, Yoshinori Tamada, Satoru Miyano
Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach. JSAI-isAI Workshops (2010)
Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano
Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning. BIBM (2010)
André Fujita, Kaname Kojima, Alexandre Galvão Patriota, João Ricardo Sato, Patricia Severino, Satoru Miyano
A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets. Bioinform. 26 (18) (2010)
Masao Nagasaki, Ayumu Saito, Euna Jeong, Chen Li, Kaname Kojima, Emi Ikeda, Satoru Miyano
Cell Illustrator 4.0: A Computational Platform for Systems Biology. Silico Biol. 10 (1-2) (2010)

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Publication Activity (10 Years)

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Satoru Miyano