Chen Li

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 1

Top Topics

Computational Power

Environmental Conditions

Top Venues

Publications

Chen Li, Jiale Qin, Keisuke Kuroyanagi, Lu Lu, Masao Nagasaki, Satoru Miyano
High-speed parameter search of dynamic biological pathways from time-course transcriptomic profiles using high-level Petri net. Biosyst. 201 (2021)
Chen Li, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Satoru Miyano
CSML2SBML: A novel tool for converting quantitative biological pathway models from CSML into SBML. Biosyst. 121 (2014)
Masao Nagasaki, André Fujita, Yayoi Sekiya, Ayumu Saito, Emi Ikeda, Chen Li, Satoru Miyano
XiP: a computational environment to create, extend and share workflows. Bioinform. 29 (1) (2013)
Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano
MIRACH: efficient model checker for quantitative biological pathway models. Bioinform. 27 (5) (2011)
Yoshimasa Miwa, Chen Li, Qi-Wei Ge, Hiroshi Matsuno, Satoru Miyano
On Determining Firing Delay Time of Transitions for Petri Net Based Signaling Pathways by Introducing Stochastic Decision Rules. Silico Biol. 10 (1-2) (2010)
Yoshimasa Miwa, Yuki Murakami, Qi-Wei Ge, Chen Li, Hiroshi Matsuno, Satoru Miyano
Delay Time Determination for the Timed Petri Net Model of a Signaling Pathway Based on Its Structural Information. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (12) (2010)
Chen Li, Masao Nagasaki, Ayumu Saito, Satoru Miyano
Time-dependent structural transformation analysis to high-level Petri net model with active state transition diagram. BMC Syst. Biol. 4 (2010)
Masao Nagasaki, Ayumu Saito, Euna Jeong, Chen Li, Kaname Kojima, Emi Ikeda, Satoru Miyano
Cell Illustrator 4.0: A Computational Platform for Systems Biology. Silico Biol. 10 (1-2) (2010)
Chen Li, Masao Nagasaki, Kazuko Ueno, Satoru Miyano
Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension. BMC Syst. Biol. 3 (2009)
Kanji Hioka, Yoshimasa Miwa, Chen Li, Qi-Wei Ge, Hiroshi Matsuno, Satoru Miyano
An Algorithm to Estimate Delay Times in Petri Net Models of Signaling Pathways with Experimental Data. BIONETICS (2008)
Masao Nagasaki, Ayumu Saito, Chen Li, Euna Jeong, Satoru Miyano
Systematic reconstruction of TRANSPATH data into Cell System Markup Language. BMC Syst. Biol. 2 (2008)
Hiroshi Matsuno, Chen Li, Satoru Miyano
Petri Net Based Descriptions for Systematic Understanding of Biological Pathways. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (11) (2006)
Chen Li, Shunichi Suzuki, Qi-Wei Ge, Mitsuru Nakata, Hiroshi Matsuno, Satoru Miyano
Structural Modeling and Analysis of Signaling Pathways Based on Petri Nets. J. Bioinform. Comput. Biol. 4 (5) (2006)
Qi-Wei Ge, Chen Li, Mitsuru Nakata
Performance Evaluation of a Two-Processor Scheduling Method for Acyclic SWITCH-less Program Nets. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (6) (2005)