Kaname Kojima

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 5

Top Topics

Bayesian Estimation

Granger Causality

Top Venues

BMC Syst. Biol.

Publications

Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
A genotype imputation method for de-identified haplotype reference information by using recurrent neural network. PLoS Comput. Biol. 16 (10) (2020)
Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki
Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation. IEEE Trans. Signal Process. 66 (23) (2018)
Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes. BMC Genom. 17 (S-1) (2016)
Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki
Estimating copy numbers of alleles from population-scale high-throughput sequencing data. BMC Bioinform. 16 (S-1) (2015)
Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data. BMC Genom. 16 (S-2) (2015)
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki
HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads. AlCoB (2014)
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. AlCoB (2014)
Takahiro Mimori, Naoki Nariai, Kaname Kojima, Mamoru Takahashi, Akira Ono, Yukuto Sato, Yumi Yamaguchi-Kabata, Masao Nagasaki
iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data. BMC Syst. Biol. 7 (S-6) (2013)
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki
A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads. Bioinform. 29 (22) (2013)
Naoki Nariai, Osamu Hirose, Kaname Kojima, Masao Nagasaki
TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference. Bioinform. 29 (18) (2013)
André Fujita, Patricia Severino, Kaname Kojima, João Ricardo Sato, Alexandre Galvão Patriota, Satoru Miyano
Functional clustering of time series gene expression data by Granger causality. BMC Syst. Biol. 6 (2012)
Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh, Satoru Miyano
Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genom. 13 (S-1) (2012)
Tomoya Higashigaki, Kaname Kojima, Rui Yamaguchi, Masato Inoue, Seiya Imoto, Satoru Miyano
Identifying Hidden Confounders in Gene Networks by Bayesian Networks. BIBE (2010)
Kaname Kojima, Masao Nagasaki, Satoru Miyano
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. BMC Bioinform. 11 (2010)
Kaname Kojima, Eric Perrier, Seiya Imoto, Satoru Miyano
Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure. J. Mach. Learn. Res. 11 (2010)
Seiya Imoto, Kaname Kojima, Eric Perrier, Yoshinori Tamada, Satoru Miyano
Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach. JSAI-isAI Workshops (2010)
André Fujita, Kaname Kojima, Alexandre Galvão Patriota, João Ricardo Sato, Patricia Severino, Satoru Miyano
A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets. Bioinform. 26 (18) (2010)
Masao Nagasaki, Ayumu Saito, Euna Jeong, Chen Li, Kaname Kojima, Emi Ikeda, Satoru Miyano
Cell Illustrator 4.0: A Computational Platform for Systems Biology. Silico Biol. 10 (1-2) (2010)
André Fujita, João Ricardo Sato, Kaname Kojima, Luciana Rodrigues Gomes, Masao Nagasaki, Mari Cleide Sogayar, Satoru Miyano
Identification of Granger Causality between Gene Sets. J. Bioinform. Comput. Biol. 8 (4) (2010)
Tatsunori B. Hashimoto, Masao Nagasaki, Kaname Kojima, Satoru Miyano
BFL: a node and edge betweenness based fast layout algorithm for large scale networks. BMC Bioinform. 10 (2009)
Kaname Kojima, Masao Nagasaki, Satoru Miyano
Fast grid layout algorithm for biological networks with sweep calculation. Bioinform. 24 (12) (2008)
Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano
An efficient grid layout algorithm for biological networks utilizing various biological attributes. BMC Bioinform. 8 (2007)
Koji Iwano, Kaname Kojima, Sadaoki Furui
A weight estimation method using LDA for multi-band speech recognition. INTERSPEECH (2006)