Kengo Kinoshita

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 12

Top Topics

Subjective Quality

Top Venues

Nucleic Acids Res.

BMC Medical Informatics Decis. Mak.

Publications

Takeshi Obayashi, Shun Kodate, Himiko Hibara, Yuki Kagaya, Kengo Kinoshita
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. Nucleic Acids Res. 51 (D1) (2023)
Shu Tadaka, Eiji Hishinuma, Shohei Komaki, Ikuko N. Motoike, Junko Kawashima, Daisuke Saigusa, Jin Inoue, Jun Takayama, Yasunobu Okamura, Yuichi Aoki, Matsuyuki Shirota, Akihito Otsuki, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita
jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population. Nucleic Acids Res. 49 (Database-Issue) (2021)
Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita
A genotype imputation method for de-identified haplotype reference information by using recurrent neural network. PLoS Comput. Biol. 16 (10) (2020)
Hayato Anzawa, Hitoshi Yamagata, Kengo Kinoshita
Theoretical characterisation of strand cross-correlation in ChIP-seq. BMC Bioinform. 21 (1) (2020)
Ryota Amano, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao
Relationship between Dynamics of Physiological Signals and Subjective Quality of Life and Its Lifestyle Dependency. EMBC (2019)
Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. Nucleic Acids Res. 47 (Database-Issue) (2019)
Shu Tadaka, Daisuke Saigusa, Ikuko N. Motoike, Jin Inoue, Yuichi Aoki, Matsuyuki Shirota, Seizo Koshiba, Masayuki Yamamoto, Kengo Kinoshita
jMorp: Japanese Multi Omics Reference Panel. Nucleic Acids Res. 46 (Database-Issue) (2018)
Yasunobu Okamura, Kengo Kinoshita
Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. BMC Bioinform. 19 (1) (2018)
Kazunori D. Yamada, Kengo Kinoshita
De novo profile generation based on sequence context specificity with the long short-term memory network. BMC Bioinform. 19 (1) (2018)
Takako Takai-Igarashi, Kengo Kinoshita, Masao Nagasaki, Soichi Ogishima, Naoki Nakamura, Sachiko Nagase, Satoshi Nagaie, Tomo Saito, Fuji Nagami, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroaki Hashizume, Shinichi Kuriyama, Atsushi Hozawa, Nobuo Yaegashi, Shigeo Kure, Gen Tamiya, Yoshio Kawaguchi, Hiroshi Tanaka, Masayuki Yamamoto
Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. BMC Medical Informatics Decis. Mak. 17 (1) (2017)
Shu Tadaka, Kengo Kinoshita
NCMine: Core-peripheral based functional module detection using near-clique mining. Bioinform. 32 (22) (2016)
Matsuyuki Shirota, Kengo Kinoshita
Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population. Database J. Biol. Databases Curation 2016 (2016)
Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. 43 (Database-Issue) (2015)
Kota Kasahara, Kengo Kinoshita
GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes. BMC Bioinform. 15 (2014)
Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Ikuko N. Motoike, Kengo Kinoshita
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Nucleic Acids Res. 41 (Database-Issue) (2013)
Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita
Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions. J. Chem. Inf. Model. 53 (1) (2013)
Takeshi Obayashi, Kengo Kinoshita
COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. 39 (Database-Issue) (2011)
Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39 (Database-Issue) (2011)
Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi
Ligand-binding site prediction of proteins based on known fragment-fragment interactions. Bioinform. 26 (12) (2010)
Takeshi Obayashi, Shinpei Hayashi, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita
ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 37 (Database-Issue) (2009)
Kengo Kinoshita, Takeshi Obayashi
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinform. 25 (20) (2009)
Miho Higurashi, Takashi Ishida, Kengo Kinoshita
PiSite: a database of protein interaction sites using multiple binding states in the PDB. Nucleic Acids Res. 37 (Database-Issue) (2009)
Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura
Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. 9 (4) (2008)
Takeshi Obayashi, Shinpei Hayashi, Masayuki Shibaoka, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita
COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. 36 (Database-Issue) (2008)
Takashi Ishida, Kengo Kinoshita
Prediction of disordered regions in proteins based on the meta approach. Bioinform. 24 (11) (2008)
Takashi Ishida, Kengo Kinoshita
PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Kengo Kinoshita, Yoichi Murakami, Haruki Nakamura
eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta
. Nucleic Acids Res. 35 (Database-Issue) (2007)
Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34 (Database-Issue) (2006)
Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura
PreBI: prediction of biological interfaces of proteins in crystals. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Kengo Kinoshita, Motonori Ota
P-cats: prediction of catalytic residues in proteins from their tertiary structures. Bioinform. 21 (17) (2005)
Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura
PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces. Bioinform. 21 (8) (2005)
Kengo Kinoshita, Haruki Nakamura
eF-site and PDBjViewer: database and viewer for protein functional sites. Bioinform. 20 (8) (2004)