Yuko Tsuchiya

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 3

Top Topics

Finding Similar

Genome Sequences

Structural Analysis

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

Publications

Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. J. Chem. Inf. Model. 63 (23) (2023)
Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa
Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics. J. Chem. Inf. Model. 59 (9) (2019)
Akira R. Kinjo, Gert-Jan Bekker, Hirofumi Suzuki, Yuko Tsuchiya, Takeshi Kawabata, Yasuyo Ikegawa, Haruki Nakamura
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. Nucleic Acids Res. 45 (Database-Issue) (2017)
Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinform. 30 (22) (2014)
Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura
PreBI: prediction of biological interfaces of proteins in crystals. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura
PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces. Bioinform. 21 (8) (2005)