Gert-Jan Bekker

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 5

Top Topics

Exhaustive Search

Subcellular Localization

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

J. Cheminformatics

Nucleic Acids Res.

Publications

Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking. J. Chem. Inf. Model. 64 (10) (2024)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking. J. Chem. Inf. Model. 61 (10) (2021)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking. J. Comput. Chem. 41 (17) (2020)
Akira R. Kinjo, Gert-Jan Bekker, Hirofumi Suzuki, Yuko Tsuchiya, Takeshi Kawabata, Yasuyo Ikegawa, Haruki Nakamura
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. Nucleic Acids Res. 45 (Database-Issue) (2017)
Gert-Jan Bekker, Haruki Nakamura, Akira R. Kinjo
Molmil: a molecular viewer for the PDB and beyond. J. Cheminformatics 8 (1) (2016)