Shide Liang

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 2

Top Topics

Protein Structure Prediction

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Shide Liang, Chi Zhang, Mingfu Zhu
Ab Initio Prediction of 3-D Conformations for Protein Long Loops with High Accuracy and Applications to Antibody CDRH3 Modeling. J. Chem. Inf. Model. 63 (23) (2023)
Shide Liang, Zhixiu Li, Jian Zhan, Yaoqi Zhou
De novo protein design by an energy function based on series expansion in distance and orientation dependence. Bioinform. 38 (1) (2021)
Shide Liang, Chi Zhang, Yaoqi Zhou
LEAP: Highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains. J. Comput. Chem. 35 (4) (2014)
Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinform. 30 (22) (2014)
Shide Liang, Dandan Zheng, Daron M. Standley, Huarong Guo, Chi Zhang
A novel function prediction approach using protein overlap networks. BMC Syst. Biol. 7 (2013)
Shide Liang, Yaoqi Zhou, Nick V. Grishin, Daron M. Standley
Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions. J. Comput. Chem. 32 (8) (2011)
Shide Liang, Dandan Zheng, Chi Zhang, Daron M. Standley
Fast and accurate prediction of protein side-chain conformations. Bioinform. 27 (20) (2011)
Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. BMC Bioinform. 11 (2010)
Shide Liang, Dandan Zheng, Chi Zhang, Martin Zacharias
Prediction of antigenic epitopes on protein surfaces by consensus scoring. BMC Bioinform. 10 (2009)