Tamotsu Noguchi

Publication Activity (10 Years)

Years Active: 1997-2019
Publications (10 Years): 2

Top Topics

Protein Protein

Homomorphic Encryption

Top Venues

Int. J. Data Min. Bioinform.

J. Bioinform. Comput. Biol.

Publications

Yusheng Jiang, Tamotsu Noguchi, Nobuyuki Kanno, Yoshiko Yasumura, Takuya Suzuki, Yu Ishimaki, Hayato Yamana
A Privacy-Preserving Query System using Fully Homomorphic Encryption with Real-World Implementation for Medicine-Side Effect Search. iiWAS (2019)
Chun Fang, Tamotsu Noguchi, Hayato Yamana, Fuzhen Sun
Identifying Protein Short Linear Motifs by Position-Specific Scoring Matrix. ICSI (2) (2016)
Chun Fang, Tamotsu Noguchi, Hayato Yamana
Condensing position-specific scoring matrixs by the Kidera factors for ligand-binding site prediction. Int. J. Data Min. Bioinform. 12 (1) (2015)
Chun Fang, Tamotsu Noguchi, Hayato Yamana
Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites. J. Bioinform. Comput. Biol. 12 (5) (2014)
Chun Fang, Tamotsu Noguchi, Hayato Yamana
Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation. Algorithms Mol. Biol. 9 (2014)
Chun Fang, Tamotsu Noguchi, Hayato Yamana
SCPSSMpred: A General Sequence-based Method for Ligand-binding Site Prediction. Inf. Media Technol. 8 (3) (2013)
Chun Fang, Tamotsu Noguchi, Daisuke Tominaga, Hayato Yamana
MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation. BMC Bioinform. 14 (2013)
Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39 (Database-Issue) (2011)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Shuichi Hirose, Kana Shimizu, Tamotsu Noguchi
POODLE-I: Disordered Region Prediction by Integrating POODLE Series and Structural Information Predictors Based on a Workflow Approach. Silico Biol. 10 (3-4) (2010)
Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation. PDPTA (2008)
Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation. Inf. Media Technol. 3 (1) (2008)
Shuichi Hirose, Kana Shimizu, Satoru Kanai, Yutaka Kuroda, Tamotsu Noguchi
POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions. Bioinform. 23 (16) (2007)
Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, S. Shimizu
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L. Parallel and Distributed Computing and Networks (2007)
Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii, Tamotsu Noguchi
Predicting mostly disordered proteins by using structure-unknown protein data. BMC Bioinform. 8 (2007)
Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe
Development of Molecular Dynamics Simulation Based Flexible Docking System. PDPTA (2007)
Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe
Development of an SVM based Prediction System for Metalbinding Sites in Protein. PDPTA (2007)
Kana Shimizu, Shuichi Hirose, Tamotsu Noguchi
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Bioinform. 23 (17) (2007)
Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi
Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder. CIBCB (2005)
Tamotsu Noguchi, Yutaka Akiyama
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res. 31 (1) (2003)
Kentaro Onizuka, Tamotsu Noguchi, Yutaka Akiyama, Hideo Matsuda
Using Data Compression for Multidimensional Distribution Analysis. IEEE Intell. Syst. 17 (3) (2002)
Tamotsu Noguchi, Hideo Matsuda, Yutaka Akiyama
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. 29 (1) (2001)
Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando, Hideo Matsuda, Yutaka Akiyama
Quick selection of representative protein chain sets based on customizable requirements. Bioinform. 16 (6) (2000)
Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi, Makoto Ando
Biological- and Chemical- Parallel Applications on a PC Cluster. ISHPC (1999)
Makoto Ando, Yutaka Akiyama, Kentaro Onizuka, Tamotsu Noguchi
ESCAPE: Parallel Tree Search System for Conformational Analysis of Peptides. PDPTA (1999)
Tamotsu Noguchi, Kentaro Onizuka, Yutaka Akiyama, Minoru Saito
PDB-REPRDB: A Database of Representative Protein Chains in PDB (Protein Data Bank). ISMB (1997)
Kentaro Onizuka, Tamotsu Noguchi, Minoru Saito, Yutaka Akiyama
Parallel PDB Data Retriever "PDB Diving Booster". ISHPC (1997)
Yutaka Akiyama, Kiyotaka Misoo, Yoshiharu Omura, Hiroshi Matsumoto, Minoru Saito, Tamotsu Noguchi, Kentaro Onizuka, Makoto Ando
Parallelization of Space Plasma Particle Simulation. ISHPC (1997)