Masakazu Sekijima

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 9

Top Topics

Gpu Accelerated

Emerging Technologies

Statistical Summaries

Reinforcement Learning

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

Publications

Mami Ozawa, Nobuaki Yasuo, Masakazu Sekijima
An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning. BIBE (2022)
Kazuki Z. Yamamoto, Nobuaki Yasuo, Masakazu Sekijima
Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides. J. Chem. Inf. Model. 62 (2) (2022)
Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima
MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning. J. Cheminformatics 13 (1) (2021)
Sherlyn Jemimah, Masakazu Sekijima, M. Michael Gromiha
ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification. Bioinform. 36 (6) (2020)
Nobuaki Yasuo, Masakazu Sekijima
Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning. J. Chem. Inf. Model. 59 (3) (2019)
Naoki Arai, Shunsuke Yoshikawa, Nobuaki Yasuo, Ryunosuke Yoshino, Masakazu Sekijima
Compound property enhancement by virtual compound synthesis. J. Bioinform. Comput. Biol. 16 (3) (2018)
Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19). NII Shonan Meet. Rep. 2018 (2018)
Nobuaki Yasuo, Yusuke Nakashima, Masakazu Sekijima
CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction. BIBM (2018)
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. 17 (S-3) (2016)
Takuro Udagawa, Masakazu Sekijima
GPU Accelerated Molecular Dynamics with Method of Heterogeneous Load Balancing. IPDPS Workshops (2015)
Takahiro Shinozaki, Toshinao Iwaki, Shiqiao Du, Masakazu Sekijima, Sadaoki Furui
Distance-based Factor Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules. Inf. Media Technol. 7 (1) (2012)
Takuro Udagawa, Masakazu Sekijima
The Power Efficiency of GPUs in Multi Nodes Environment with Molecular Dynamics. ICPP Workshops (2011)
Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation. PDPTA (2008)
Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation. Inf. Media Technol. 3 (1) (2008)
Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, S. Shimizu
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L. Parallel and Distributed Computing and Networks (2007)
Junta Doi, Kentaro Shimizu, Masakazu Sekijima
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection. ICNSC (2007)
Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe
Development of Molecular Dynamics Simulation Based Flexible Docking System. PDPTA (2007)
Manami Sasaki, Masakazu Sekijima, Masami Takata, Kazuki Joe
Optimization of Molecular Dynamics Simulation on Cell Processor. PDPTA (2007)
Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe
Development of an SVM based Prediction System for Metalbinding Sites in Protein. PDPTA (2007)
Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama
Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing. ISHPC (2003)
Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS (2002)