Kris Laukens

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 17

Top Topics

Feature Representations

Association Rules

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Issar Arab, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat, Wout Bittremieux
Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction. J. Chem. Inf. Model. 64 (7) (2024)
Danh Bui Thi, Youzhong Liu, Jennifer L. Lippens, Kris Laukens, Thomas De Vijlder
TransExION: a transformer based explainable similarity metric for comparing IONS in tandem mass spectrometry. J. Cheminformatics 16 (1) (2024)
Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman
The pitfalls of negative data bias for the T-cell epitope specificity challenge. Nat. Mac. Intell. 5 (10) (2023)
Danh Bui Thi, Pieter Meysman, Kris Laukens
MoMAC: Multi-objective optimization to combine multiple association rules into an interpretable classification. Appl. Intell. 52 (3) (2022)
Lennert Verboven, Toon Calders, Steven Callens, John Black, Gary Maartens, Kelly E. Dooley, Samantha Potgieter, Robin M. Warren, Kris Laukens, Annelies Van Rie
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Sebastiaan Valkiers, Marc van Houcke, Kris Laukens, Pieter Meysman
ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity. Bioinform. 37 (24) (2021)
Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. Briefings Bioinform. 22 (4) (2021)
Pieter Moris, Danh Bui Thi, Kris Laukens, Pieter Meysman
MILES: a Java tool to extract node-specific enriched subgraphs in biomolecular networks. Bioinform. 36 (6) (2020)
Danh Bui Thi, Pieter Meysman, Kris Laukens
Clustering association rules to build beliefs and discover unexpected patterns. Appl. Intell. 50 (6) (2020)
Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Pieter Meysman, Nicolas De Neuter, Sofie Gielis, Danh Bui Thi, Benson Ogunjimi, Kris Laukens
On the viability of unsupervised T-cell receptor sequence clustering for epitope preference. Bioinform. 35 (9) (2019)
Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens
Grasping frequent subgraph mining for bioinformatics applications. BioData Min. 11 (1) (2018)
Charlie Beirnaert, Pieter Meysman, Trung-Nghia Vu, Nina Hermans, Sandra Apers, Luc Pieters, Adrian Covaci, Kris Laukens
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification. PLoS Comput. Biol. 14 (3) (2018)
Ajay Anand Kumar, Lut Van Laer, Maaike Alaerts, Amin Ardeshirdavani, Yves Moreau, Kris Laukens, Bart Loeys, Geert Vandeweyer
pBRIT: gene prioritization by correlating functional and phenotypic annotations through integrative data fusion. Bioinform. 34 (13) (2018)
Kevin Titeca, Pieter Meysman, Kris Laukens, Lennart Martens, Jan Tavernier, Sven Eyckerman
sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets. Bioinform. 33 (12) (2017)
Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Res. 44 (Database-Issue) (2016)
Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. 17 (S-3) (2016)
Stefan Naulaerts, Pieter Meysman, Wim Vanden Berghe, Kris Laukens
Mining the human proteome for conserved mechanisms. BMC Bioinform. 16 (S-3) (2015)
Tayena Hendrickx, Boris Cule, Pieter Meysman, Stefan Naulaerts, Kris Laukens, Bart Goethals
Mining Association Rules in Graphs Based on Frequent Cohesive Itemsets. PAKDD (2) (2015)
Pieter Meysman, Cheng Zhou, Boris Cule, Bart Goethals, Kris Laukens
Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns. BioData Min. 8 (2015)
Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens
A primer to frequent itemset mining for bioinformatics. Briefings Bioinform. 16 (2) (2015)
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (5) (2014)
Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal, Julio Collado-Vides, Kristof Engelen
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. Nucleic Acids Res. 42 (Database-Issue) (2014)
Cheng Zhou, Pieter Meysman, Boris Cule, Kris Laukens, Bart Goethals
Mining spatially cohesive itemsets in protein molecular structures. BIOKDD (2013)
Dong Do Duc, Huy Q. Dinh, Thanh Hai Dang, Kris Laukens, Huan Hoang Xuan
AcoSeeD: An Ant Colony Optimization for Finding Optimal Spaced Seeds in Biological Sequence Search. ANTS (2012)
Pieter Meysman, Thanh Hai Dang, Kris Laukens, Riet De Smet, Yan Wu, Kathleen Marchal, Kristof Engelen
. Nucleic Acids Res. 39 (2) (2011)
Trung-Nghia Vu, Dirk Valkenborg, Koen Smets, Kim A. Verwaest, Roger Dommisse, Filip Lemière, Alain Verschoren, Bart Goethals, Kris Laukens
An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data. BMC Bioinform. 12 (2011)
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geert De Jaeger, Martin Kuiper, Erwin Witters, Alain Verschoren, Koenraad Van Leemput
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL. BMC Bioinform. 11 (2010)
Thanh Hai Dang, Koenraad Van Leemput, Alain Verschoren, Kris Laukens
Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinform. 24 (24) (2008)
Kris Laukens, Rune Matthiesen, Filip Lemière, Eddy Esmans, Harry Van Onckelen, Ole Nørregaard Jensen, Erwin Witters
Integration of gel-based proteome data with pProRep. Bioinform. 22 (22) (2006)