Chiara Romualdi

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 12

Top Topics

Conditional Dependencies

Gene Expression

Multiple Sclerosis

Top Venues

J. Comput. Biol.

Publications

Tommaso Becchi, Luca Beltrame, Laura Mannarino, Enrica Calura, Sergio Marchini, Chiara Romualdi
A pan-cancer landscape of pathogenic somatic copy number variations. J. Biomed. Informatics 147 (2023)
Matteo Calgaro, Chiara Romualdi, Davide Risso, Nicola Vitulo
benchdamic: benchmarking of differential abundance methods for microbiome data. Bioinform. 39 (1) (2023)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi
The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis. Bioinform. 38 (4) (2022)
Matteo Borella, Graziano Martello, Davide Risso, Chiara Romualdi
PsiNorm: a scalable normalization for single-cell RNA-seq data. Bioinform. 38 (1) (2021)
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo, Francesco Palini, Chiara Romualdi
The Power of Alignment-Free Histogram-based Functions: a Comprehensive Genome Scale Experimental Analysis - Version 1. CoRR (2021)
Gabriele Sales, Enrica Calura, Chiara Romualdi
metaGraphite-a new layer of pathway annotation to get metabolite networks. Bioinform. 35 (7) (2019)
Elisa Salviato, Vera Djordjilovic, Monica Chiogna, Chiara Romualdi
SourceSet: A graphical model approach to identify primary genes in perturbed biological pathways. PLoS Comput. Biol. 15 (10) (2019)
Vera Djordjilovic, Monica Chiogna, Chiara Romualdi, Elisa Salviato
Searching for the Source of Difference: A Graphical Model Approach. CIBB (2018)
Alessandro Palombit, Marco Castellaro, Massimiliano Calabrese, Chiara Romualdi, Francesca Benedetta Pizzini, S. Montemezzi, Enrico Grisan, Alessandra Bertoldo
Cortical Thickness variability in Multiple Sclerosis: The role of lesion segmentation and filling. ISBI (2017)
Elisa Salviato, Vera Djordjilovic, Monica Chiogna, Chiara Romualdi
simPATHy: a new method for simulating data from perturbed biological PATHways. Bioinform. 33 (3) (2017)
Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Res. 44 (Database-Issue) (2016)
Fabrizio Serra, Chiara Romualdi, Federico Fogolari
Similarity Measures Based on the Overlap of Ranked Genes Are Effective for Comparison and Classification of Microarray Data. J. Comput. Biol. 23 (7) (2016)
Paolo G. V. Martini, Gabriele Sales, Enrica Calura, Stefano Cagnin, Monica Chiogna, Chiara Romualdi
timeClip: pathway analysis for time course data without replicates. BMC Bioinform. 15 (S-5) (2014)
Gabriele Sales, Enrica Calura, Paolo G. V. Martini, Chiara Romualdi
Graphite Web: web tool for gene set analysis exploiting pathway topology. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Andrea Bisognin, Gabriele Sales, Alessandro Coppe, Stefania Bortoluzzi, Chiara Romualdi
: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi
graphite - a Bioconductor package to convert pathway topology to gene network. BMC Bioinform. 13 (2012)
Gabriele Sales, Chiara Romualdi
- a parallel R package for mutual information estimation and gene network reconstruction. Bioinform. 27 (13) (2011)
Luca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damariz Rivero Guedez, Michele Donato, Chiara Romualdi, Sorin Draghici, Duccio Cavalieri
The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. Bioinform. 27 (15) (2011)
Paolo G. V. Martini, Davide Risso, Gabriele Sales, Chiara Romualdi, Gerolamo Lanfranchi, Stefano Cagnin
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies. BMC Bioinform. 12 (2011)
Gabriele Sales, Alessandro Coppe, Andrea Bisognin, Marta Biasiolo, Stefania Bortoluzzi, Chiara Romualdi
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Maria Sofia Massa, Monica Chiogna, Chiara Romualdi
Gene set analysis exploiting the topology of a pathway. BMC Syst. Biol. 4 (2010)
Monica Chiogna, Maria Sofia Massa, Davide Risso, Chiara Romualdi
A comparison on effects of normalisations in the detection of differentially expressed genes. BMC Bioinform. 10 (2009)
Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi
A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinform. 10 (2009)
Davide Risso, Maria Sofia Massa, Monica Chiogna, Chiara Romualdi
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. Bioinform. 25 (20) (2009)
Massimiliano Calabrese, Massimo Filippi, Marco Rovaris, Irene Mattisi, Valentina Bernardi, Matteo Atzori, Alice Favaretto, Luigi Barachino, Luciano Rinaldi, Chiara Romualdi, Paola Perini, Paolo Gallo
Morphology and evolution of cortical lesions in multiple sclerosis. A longitudinal MRI study. NeuroImage 42 (4) (2008)
Nicola Vitulo, Alessandro Vezzi, Chiara Romualdi, Stefano Campanaro, Giorgio Valle
family using phylogenetic profile. BMC Bioinform. 8 (S-1) (2007)
Davide Campagna, Chiara Romualdi, Nicola Vitulo, Micky Del Favero, Matej Lexa, Nicola Cannata, Giorgio Valle
RAP: a new computer program for de novo identification of repeated sequences in whole genomes. Bioinform. 21 (5) (2005)
Chiara Romualdi, Nicola Vitulo, Micky Del Favero, Gerolamo Lanfranchi
MIDAW: a web tool for statistical analysis of microarray data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Stefano Toppo, Nicola Cannata, Paolo Fontana, Chiara Romualdi, Paolo Laveder, Emanuela Bertocco, Gerolamo Lanfranchi, Giorgio Valle
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts. Bioinform. 19 (5) (2003)
Nicola Cannata, Stefano Toppo, Chiara Romualdi, Giorgio Valle
Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices. Bioinform. 18 (8) (2002)
Stefania Bortoluzzi, F. d'Alessi, Chiara Romualdi, Gian Antonio Danieli
Differential expression of genes coding for ribosomal proteins in different human tissues. Bioinform. 17 (12) (2001)