Davide Risso

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 8

Top Topics

Clustering Result

Gene Expression Datasets

Top Venues

PLoS Comput. Biol.

Publications

Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit
Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinform. 25 (1) (2024)
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19 (8) (2023)
Matteo Calgaro, Chiara Romualdi, Davide Risso, Nicola Vitulo
benchdamic: benchmarking of differential abundance methods for microbiome data. Bioinform. 39 (1) (2023)
Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinform. 38 (11) (2022)
Davide Risso, Stefano Maria Pagnotta
Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles. Bioinform. 37 (16) (2021)
Matteo Borella, Graziano Martello, Davide Risso, Chiara Romualdi
PsiNorm: a scalable normalization for single-cell RNA-seq data. Bioinform. 38 (1) (2021)
Stephanie C. Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
mbkmeans: Fast clustering for single cell data using mini-batch k-means. PLoS Comput. Biol. 17 (1) (2021)
Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. PLoS Comput. Biol. 14 (9) (2018)
Riccardo De Bin, Davide Risso
A novel approach to the clustering of microarray data via nonparametric density estimation. BMC Bioinform. 12 (2011)
Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit
GC-Content Normalization for RNA-Seq Data. BMC Bioinform. 12 (2011)
Paolo G. V. Martini, Davide Risso, Gabriele Sales, Chiara Romualdi, Gerolamo Lanfranchi, Stefano Cagnin
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies. BMC Bioinform. 12 (2011)
Monica Chiogna, Maria Sofia Massa, Davide Risso, Chiara Romualdi
A comparison on effects of normalisations in the detection of differentially expressed genes. BMC Bioinform. 10 (2009)
Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi
A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinform. 10 (2009)
Davide Risso, Maria Sofia Massa, Monica Chiogna, Chiara Romualdi
A modified LOESS normalization applied to microRNA arrays: a comparative evaluation. Bioinform. 25 (20) (2009)