Laurent Gatto

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 12

Top Topics

Mass Spectrometry

Computationally Feasible

Variational Bayesian Inference

Top Venues

PLoS Comput. Biol.

Publications

Philippe Hauchamps, Babak Bayat, Simon Delandre, Mehdi Hamrouni, Marie Toussaint, Stephane Temmerman, Dan Lin, Laurent Gatto
CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data. BMC Bioinform. 25 (1) (2024)
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19 (8) (2023)
Theo Killian, Laurent Gatto
Exploiting the DepMap cancer dependency data using the depmap R package. F1000Research 10 (2021)
Oliver M. Crook, Aikaterini Geladaki, Daniel J. H. Nightingale, Owen L. Vennard, Kathryn S. Lilley, Laurent Gatto, Paul D. W. Kirk
A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection. PLoS Comput. Biol. 16 (11) (2020)
Johannes Rainer, Laurent Gatto, Christian X. Weichenberger
ensembldb: an R package to create and use Ensembl-based annotation resources. Bioinform. 35 (17) (2019)
Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D. W. Kirk, Laurent Gatto
A Bioconductor workflow for the Bayesian analysis of spatial proteomics. F1000Research 8 (2019)
Oliver M. Crook, Claire M. Mulvey, Paul D. W. Kirk, Kathryn S. Lilley, Laurent Gatto
A Bayesian mixture modelling approach for spatial proteomics. PLoS Comput. Biol. 14 (11) (2018)
Felipe da Veiga Leprevost, Björn A. Grüning, Saulo Aflitos, Hannes L. Röst, Julian Uszkoreit, Harald Barsnes, Marc Vaudel, Pablo Moreno, Laurent Gatto, Jonas Weber, Mingze Bai, Rafael C. Jimenez, Timo Sachsenberg, Julianus Pfeuffer, Roberto Vera Alvarez, Johannes Griss, Alexey I. Nesvizhskii, Yasset Pérez-Riverol
BioContainers: an open-source and community-driven framework for software standardization. Bioinform. 33 (16) (2017)
Samuel Wieczorek, Florence Combes, Cosmin Lazar, Quentin Giai Gianetto, Laurent Gatto, Alexia Dorffer, Anne-Marie Hesse, Yohann Couté, Myriam Ferro, Christophe Bruley, Thomas Burger
DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics. Bioinform. 33 (1) (2017)
Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
A Bioconductor workflow for processing and analysing spatial proteomics data. F1000Research 5 (2016)
Yasset Pérez-Riverol, Laurent Gatto, Rui Wang, Timo Sachsenberg, Julian Uszkoreit, Felipe da Veiga Leprevost, Christian Fufezan, Tobias Ternent, Stephen J. Eglen, Daniel S. Katz, Tom J. Pollard, Alexander Konovalov, Robert M. Flight, Kai Blin, Juan Antonio Vizcaíno
Ten Simple Rules for Taking Advantage of Git and GitHub. PLoS Comput. Biol. 12 (7) (2016)
Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey, Andy Christoforou, Arnoud Groen, Matthew W. B. Trotter, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. PLoS Comput. Biol. 12 (5) (2016)
Laurent Gatto, Lisa M. Breckels, Samuel Wieczorek, Thomas Burger, Kathryn S. Lilley
Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata. Bioinform. 30 (9) (2014)
Laurent Gatto, Kathryn S. Lilley
MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Bioinform. 28 (2) (2012)