Vincent J. Carey

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 7

Top Topics

Semantically Rich

Data Structures And Algorithms

Inter Annotator Agreement

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19 (8) (2023)
Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22 (1) (2021)
Rose Du, Vincent J. Carey, Scott T. Weiss
deconvSeq: deconvolution of cell mixture distribution in sequencing data. Bioinform. 35 (24) (2019)
Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean R. Davis, Levi Waldron, Martin Morgan, Vincent J. Carey
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8 (2019)
Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean R. Davis
package ecosystem. F1000Research 8 (2019)
Benjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey
ogttMetrics: Data structures and algorithms for oral glucose tolerance tests. F1000Research 6 (2017)
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17 (4) (2016)
Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. Bioinform. 30 (14) (2014)
Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9 (8) (2013)
Jen-hwa Chu, Ross Lazarus, Vincent J. Carey, Benjamin A. Raby
Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. BMC Syst. Biol. 5 (2011)
Michael F. Lawrence, Robert Gentleman, Vincent J. Carey
rtracklayer: an R package for interfacing with genome browsers. Bioinform. 25 (14) (2009)
Adam L. Asare, Zhong Gao, Vincent J. Carey, Richard Wang, Vicki Seyfert-Margolis
Power enhancement via multivariate outlier testing with gene expression arrays. Bioinform. 25 (1) (2009)
Jen-hwa Chu, Scott T. Weiss, Vincent J. Carey, Benjamin A. Raby
A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphism. BMC Syst. Biol. 3 (2009)
Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinform. 25 (11) (2009)
Rose Du, Kelan Tantisira, Vincent J. Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T. Kho, Barbara J. Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J. Mariani, J. Steven Leeder, Scott T. Weiss
Platform dependence of inference on gene-wise and gene-set involvement in human lung development. BMC Bioinform. 10 (2009)
Vincent J. Carey, Robert Gentleman
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. Pacific Symposium on Biocomputing (2009)
Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy
SGDI: System for Genomic Data Integration. Pacific Symposium on Biocomputing (2008)
Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici
Machine Learning and Its Applications to Biology. PLoS Comput. Biol. 3 (6) (2007)
Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23 (4) (2007)
Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman
Graphs in molecular biology. BMC Bioinform. 8 (S-6) (2007)
Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman
Network structures and algorithms in Bioconductor. Bioinform. 21 (1) (2005)
Jianhua Zhang, Vincent J. Carey, Robert Gentleman
An extensible application for assembling annotation for genomic data. Bioinform. 19 (1) (2003)