Martin Morgan

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 9

Top Topics

Semantically Rich

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Qian Liu, Qiang Hu, Song Liu, Alan Hutson, Martin Morgan
ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management. BMC Bioinform. 25 (1) (2024)
Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? CoRR (2023)
Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19 (8) (2023)
Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron
Toward a gold standard for benchmarking gene set enrichment analysis. Briefings Bioinform. 22 (1) (2021)
Qiang Hu, Alan Hutson, Song Liu, Martin Morgan, Qian Liu
Bioconductor toolchain for reproducible bioinformatics pipelines using Rcwl and RcwlPipelines. Bioinform. 37 (19) (2021)
Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori A. Shepherd, Martin Morgan, Rob Patro
Tximeta: Reference sequence checksums for provenance identification in RNA-seq. PLoS Comput. Biol. 16 (2) (2020)
Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean R. Davis, Levi Waldron, Martin Morgan, Vincent J. Carey
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8 (2019)
Abbas A. Rizvi, Ezgi Karaesmen, Martin Morgan, Leah Preus, Junke Wang, Michael Sovic, Theresa Hahn, Lara E. Sucheston-Campbell
gwasurvivr: an R package for genome-wide survival analysis. Bioinform. 35 (11) (2019)
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17 (4) (2016)
Valerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan
VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants. Bioinform. 30 (14) (2014)
Michael F. Lawrence, Martin Morgan
Scalable Genomics with R and Bioconductor. CoRR (2014)
Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinform. 25 (19) (2009)
Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23 (4) (2007)