Robert Gentleman

Publication Activity (10 Years)

Years Active: 1996-2024
Publications (10 Years): 5

Top Topics

Biomedical Ontologies

Medical Subject Headings

Clinical Diagnosis

Top Venues

Database J. Biol. Databases Curation

Pacific Symposium on Biocomputing

Publications

Rafael S. Gonçalves, Jason Payne, Amelia L. M. Tan, Carmen Benitez, Jamie Haddock, Robert Gentleman
The text2term tool to map free-text descriptions of biomedical terms to ontologies. CoRR (2024)
Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane
Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR (2024)
Laha Ale, Robert Gentleman, Teresa Filshtein Sonmez, Deepayan Sarkar, Christopher Endres
nhanesA: achieving transparency and reproducibility in NHANES research. Database J. Biol. Databases Curation 2024 (2024)
Ludwig Geistlinger, Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman
BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinform. 39 (3) (2023)
Michael F. Lawrence, Robert Gentleman
VariantTools: an extensible framework for developing and testing variant callers. Bioinform. 33 (20) (2017)
Oleg Mayba, Florian Gnad, Michael Peyton, Fan Zhang, Kimberly Walter, Pan Du, Melanie A. Huntley, Zhaoshi Jiang, Jinfeng Liu, Peter M. Haverty, Robert Gentleman, Ruiqiang Li, John D. Minna, Yingrui Li, David S. Shames, Zemin Zhang
Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach. Pacific Symposium on Biocomputing (2014)
Thomas Sandmann, Sarah K. Kummerfeld, Robert Gentleman, Richard Bourgon
gCMAP: user-friendly connectivity mapping with R. Bioinform. 30 (1) (2014)
Zizhen Yao, Kyle L. MacQuarrie, Abraham P. Fong, Stephen J. Tapscott, Walter L. Ruzzo, Robert Gentleman
Discriminative motif analysis of high-throughput dataset. Bioinform. 30 (6) (2014)
Michael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey
Software for Computing and Annotating Genomic Ranges. PLoS Comput. Biol. 9 (8) (2013)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman
Workshop Introduction. Pacific Symposium on Biocomputing (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Martin Morgan, Simon Anders, Michael F. Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinform. 25 (19) (2009)
Audrey Kauffmann, Robert Gentleman, Wolfgang Huber
arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. Bioinform. 25 (3) (2009)
Alain C. Vandal, Marston D. E. Conder, Robert Gentleman
Minimal Covers of Maximal Cliques for Interval Graphs. Ars Comb. 92 (2009)
Michael F. Lawrence, Robert Gentleman, Vincent J. Carey
rtracklayer: an R package for interfacing with genome browsers. Bioinform. 25 (14) (2009)
Florian Hahne, Nolwenn LeMeur, Ryan Remy Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman
flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinform. 10 (2009)
Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman
iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor. Adv. Bioinformatics 2009 (2009)
Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby
Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. Bioinform. 25 (11) (2009)
Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl
Knowledge based identification of essential signaling from genome-scale siRNA experiments. BMC Syst. Biol. 3 (2009)
David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette
: A new forum for biological databases and curation. Database J. Biol. Databases Curation 2009 (2009)
Vincent J. Carey, Robert Gentleman
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. Pacific Symposium on Biocomputing (2009)
Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy
SGDI: System for Genomic Data Integration. Pacific Symposium on Biocomputing (2008)
Assaf P. Oron, Zhen Jiang, Robert Gentleman
Gene set enrichment analysis using linear models and diagnostics. Bioinform. 24 (22) (2008)
Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman
Estimating node degree in bait-prey graphs. Bioinform. 24 (2) (2008)
Deepayan Sarkar, Nolwenn Le Meur, Robert Gentleman
Using flowViz to visualize flow cytometry data. Bioinform. 24 (6) (2008)
Tony Chiang, Nianhua Li, Sandra E. Orchard, Samuel Kerrien, Henning Hermjakob, Robert Gentleman, Wolfgang Huber
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinform. 24 (8) (2008)
Seth Falcon, Robert Gentleman
Using GOstats to test gene lists for GO term association. Bioinform. 23 (2) (2007)
Vincent J. Carey, Martin Morgan, Seth Falcon, Ross Lazarus, Robert Gentleman
GGtools: analysis of genetics of gene expression in bioconductor. Bioinform. 23 (4) (2007)
Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman
Graphs in molecular biology. BMC Bioinform. 8 (S-6) (2007)
Zhen Jiang, Robert Gentleman
Extensions to gene set enrichment. Bioinform. 23 (3) (2007)
Vincent J. Carey, Jeff Gentry, Elizabeth Whalen, Robert Gentleman
Network structures and algorithms in Bioconductor. Bioinform. 21 (1) (2005)
Denise Scholtens, Marc Vidal, Robert Gentleman
Local modeling of global interactome networks. Bioinform. 21 (17) (2005)
Wolfgang Huber, Robert Gentleman
matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements. Bioinform. 20 (10) (2004)
Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman
A graph-theoretic approach to testing associations between disparate sources of functional genomics data. Bioinform. 20 (18) (2004)
Jianhua Zhang, Vincent J. Carey, Robert Gentleman
An extensible application for assembling annotation for genomic data. Bioinform. 19 (1) (2003)
Nozer D. Singpurwalla, Robert Gentleman, Willem J. Heiser, Dibyen Majumdar
Book reviews. Stat. Comput. 6 (4) (1996)