B. F. Francis Ouellette

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 4

Top Topics

Molecular Biology

Genomic Sequences

Genotype Phenotype

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Patricia M. Palagi, Russell Schwartz, Scott Markel, B. F. Francis Ouellette
Ten simple rules for writing a PLOS Computational Biology quick tips article. PLoS Comput. Biol. 19 (12) (2023)
Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks
Genomic basis for RNA alterations in cancer. Nat. 578 (7793) (2020)
Michal Krassowski, Marta Paczkowska, Kim Cullion, Tina Huang, Irakli Dzneladze, B. F. Francis Ouellette, Joseph Tadashi Yamada, Amelie Fradet-Turcotte, Jüri Reimand
ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. Nucleic Acids Res. 46 (Database-Issue) (2018)
Michelle D. Brazas, B. F. Francis Ouellette
Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers. PLoS Comput. Biol. 12 (6) (2016)
Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg
A Quick Guide for Building a Successful Bioinformatics Community. PLoS Comput. Biol. 11 (2) (2015)
Michelle D. Brazas, B. F. Francis Ouellette
Navigating the changing learning landscape: perspective from bioinformatics.ca. Briefings Bioinform. 14 (5) (2013)
Joanne A. Fox, B. F. Francis Ouellette
Education in Computational Biology Today and Tomorrow. PLoS Comput. Biol. 9 (12) (2013)
Warren A. Cheung, B. F. Francis Ouellette, Wyeth W. Wasserman
Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs). BMC Bioinform. 13 (2012)
Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012)
Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette
A decade of web server updates at the bioinformatics links directory: 2003-2012. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Michelle D. Brazas, David S. Yim, Joseph Tadashi Yamada, B. F. Francis Ouellette
The 2011 bioinformatics links directory update: more resources, tools and databases and features to empower the bioinformatics community. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Kelvin Xi Zhang, B. F. Francis Ouellette
CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data. PLoS Comput. Biol. 7 (3) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette
Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Kelvin Xi Zhang, B. F. Francis Ouellette
Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence. Bioinform. 26 (4) (2010)
Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette
Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Kelvin Xi Zhang, B. F. Francis Ouellette
GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast. BMC Bioinform. 10 (S-1) (2009)
David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette
: A new forum for biological databases and curation. Database J. Biol. Databases Curation 2009 (2009)
Kelvin Xi Zhang, B. F. Francis Ouellette
A new approach to predict interactions between integral membrane proteins in yeast. IEEE Congress on Evolutionary Computation (2008)
Michelle D. Brazas, Joanne A. Fox, Timothy Brown, Scott McMillan, B. F. Francis Ouellette
Keeping pace with the data: 2008 update on the Bioinformatics Links Directory. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette
Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks. AINA Workshops (1) (2007)
Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette
Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette
A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, M. Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue
The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 33 (Database-Issue) (2005)
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. Yuen, John Ling, B. F. Francis Ouellette
Atlas - a data warehouse for integrative bioinformatics. BMC Bioinform. 6 (2005)
Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette
The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Perseus I. Missirlis, Carri-Lyn R. Mead, Stefanie L. Butland, B. F. Francis Ouellette, Rebecca S. Devon, Blair R. Leavitt, Robert A. Holt
Satellog: A database for the identification and prioritization of satellite repeats in disease association studies. BMC Bioinform. 6 (2005)
Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette
Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinform. 5 (2004)
Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette
GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results. Bioinform. 19 (10) (2003)
Sanja Rogic, B. F. Francis Ouellette, Alan K. Mackworth
Improving gene recognition accuracy by combining predictions from two gene-finding programs. Bioinform. 18 (8) (2002)
Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue
BIND - The Biomolecular Interaction Network Database. Nucleic Acids Res. 29 (1) (2001)
Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp, David L. Wheeler
GenBank. Nucleic Acids Res. 27 (1) (1999)
Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette
GenBank. Nucleic Acids Res. 26 (1) (1998)